prot_H-elongata_contig5737.13203.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5737.13203.1
Unique Nameprot_H-elongata_contig5737.13203.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length308
Homology
BLAST of mRNA_H-elongata_contig5737.13203.1 vs. uniprot
Match: D7FNL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL4_ECTSI)

HSP 1 Score: 403 bits (1035), Expect = 1.020e-131
Identity = 206/308 (66.88%), Postives = 245/308 (79.55%), Query Frame = 0
Query:    1 QVSFKKKETEKATAARKSTFAYKKSKEDAEPWLPLEIYGQNDQFSLDEFSRMFFLHEGHASKQRGMATAKEFPAADRYLRGLDYIEEYDENGESCSVNLKGRSQTSAIDLVTPGTSTYSPVNIPATPLHQLQGDAKIVGYLMLAHLAPFSMLLTVSNVSAAAALRALSADGRRGGLLLRGNWAARAEDVWRDEPSQAADCLSVAQCLLHRYGAVSRPDLQRRFPDLDPSLLKKLLSNIAELDTIGRRWVPKLKDGISFGLNYRSIVDLEEDRWALQATSLRERLGAEILAPPACEAFEPFTEVLDAVS 308
            QVSFKKKE+E+ATAARKS++AYKKS EDAEPW+ LE++GQND  SLDEFSRMF   +  AS  RG  T KEFP  +RYL+GLDY+EEYDENGES S   +GRS   +IDLVT GT TYSPVN+PA P HQL GDAK+VGYL LAHL PFSMLL V+N+S  A L+ALS +GR+ GLL+RGNWAA   DVW   P  AADCLSVAQCLLHRYGAVSRPDLQRRFP+L+P  LK+LL  IAELDT+ RRWVPK+KDG++FG+ +  IV+LEE+RW L  + L+ERLG +ILAPP+C  F  F +VL+A +
Sbjct:  205 QVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFV--DDDASANRG-TTTKEFPPCERYLQGLDYMEEYDENGESFSAGGRGRSLADSIDLVTAGTGTYSPVNLPAAPAHQLGGDAKVVGYLKLAHLVPFSMLLDVTNMSPDAVLQALSVEGRQKGLLMRGNWAALPADVWPRGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEPVTLKELLLRIAELDTVDRRWVPKVKDGLTFGMEHPEIVELEEERWTLHESILKERLGDDILAPPSCPTFGTFVKVLEAAA 509          
BLAST of mRNA_H-elongata_contig5737.13203.1 vs. uniprot
Match: W7TNB1_9STRA (Dna-directed rna polymerase iii subunit rpc5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.680e-8
Identity = 81/324 (25.00%), Postives = 132/324 (40.74%), Query Frame = 0
Query:    2 VSFKKKETEKATAARKSTFAYKKSKEDAEPWLPLEIYGQNDQFSLDEFSRMFFLHE---GHASKQRGMAT-------AKEFPAADRYLRGLDYIEEYDENGESCSVNLKGRSQTSAI---------DLVTPGTSTYSPVNI---------PATP-----LHQLQGDAKIVGYLMLAHLAPFSMLLTVSNVSAA------------------AALRALSADG-RRGGLLLRGNWAARAEDVWRDEPSQAADCLSVAQCLLHRYGAVSRPDLQRRFPDLDPSLLKKLLSNIAELDTIGRRWVPKLKDGISFGLNYRSIVDLEEDRW 273
            + +KK+E+EKA AAR++++A+KK +E+ EPW  L ++  + Q    +  RMF   E   G   K +G  T       +++  AA R            E GE  S  +  + Q SA          D V  G  T    N+         P  P     +  +QG  ++   L  AH+  F  +L +S  + +                  +A+ AL+ +  ++  +L+RGNW  ++  +     ++ +        LL RYG V+R         L     + LLS IA LD   R WV    D I F   +  +   ++  W
Sbjct:  225 IEYKKRESEKAAAARRTSYAFKKQQEEGEPWRELLVHPLSSQTGQTDLERMFCTREEDMGRKIKFQGGGTIYLDLYRSQKSKAAAR------------ERGEGLSRTIDHQQQHSAAFLDAGMDAGDGVIDGDETAVKANLSSLAVGNRAPRDPSIGALIPHMQGAEQVATILARAHVVSFEQVLELSGGNGSWPPHGGATTPEGVDHATGSAVSALALERLKKCAVLVRGNWVRKS--ILYGLSARLSHARDALLLLLDRYGGVNRQQFGAA-AGLSDEESRGLLSPIATLDKAARMWVMVPPDDIIFLTAFPEVALQQQRLW 533          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5737.13203.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNL4_ECTSI1.020e-13166.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TNB1_9STRA4.680e-825.00Dna-directed rna polymerase iii subunit rpc5 n=2 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006886DNA-directed RNA polymerase III subunit Rpc5PFAMPF04801Sin_Ncoord: 1..279
e-value: 3.2E-34
score: 118.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5737contigH-elongata_contig5737:784..4555 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5737.13203.1mRNA_H-elongata_contig5737.13203.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5737 784..4555 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5737.13203.1 ID=prot_H-elongata_contig5737.13203.1|Name=mRNA_H-elongata_contig5737.13203.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=308bp
QVSFKKKETEKATAARKSTFAYKKSKEDAEPWLPLEIYGQNDQFSLDEFS
RMFFLHEGHASKQRGMATAKEFPAADRYLRGLDYIEEYDENGESCSVNLK
GRSQTSAIDLVTPGTSTYSPVNIPATPLHQLQGDAKIVGYLMLAHLAPFS
MLLTVSNVSAAAALRALSADGRRGGLLLRGNWAARAEDVWRDEPSQAADC
LSVAQCLLHRYGAVSRPDLQRRFPDLDPSLLKKLLSNIAELDTIGRRWVP
KLKDGISFGLNYRSIVDLEEDRWALQATSLRERLGAEILAPPACEAFEPF
TEVLDAVS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006886RNA_pol_III_Rpc5