prot_H-elongata_contig57356.13202.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57356.13202.1
Unique Nameprot_H-elongata_contig57356.13202.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length85
Homology
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: I3L3Z8_HUMAN (Pre-mRNA-processing-splicing factor 8 (Fragment) n=4 Tax=Boreoeutheria TaxID=1437010 RepID=I3L3Z8_HUMAN)

HSP 1 Score: 184 bits (467), Expect = 5.070e-57
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 80
            DRHTLAYDKGWRVRTDFKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:   70 DRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 149          
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A392Q2T9_9FABA (Pre-mRNA-processing-splicing factor 8-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q2T9_9FABA)

HSP 1 Score: 181 bits (458), Expect = 2.580e-56
Identity = 76/80 (95.00%), Postives = 79/80 (98.75%), Query Frame = 0
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 80
            DRHTLAYDKGWRVR DFKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTD+IQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:   70 DRHTLAYDKGWRVRADFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 149          
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A1S3GU36_DIPOR (pre-mRNA-processing-splicing factor 8-like n=2 Tax=Bilateria TaxID=33213 RepID=A0A1S3GU36_DIPOR)

HSP 1 Score: 184 bits (467), Expect = 4.240e-56
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 80
            DRHTLAYDKGWRVRTDFKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:   39 DRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 118          
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A1B6JTR3_9HEMI (U6-snRNA_bdg domain-containing protein (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A1B6JTR3_9HEMI)

HSP 1 Score: 182 bits (462), Expect = 1.060e-55
Identity = 76/80 (95.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 80
            DRHTLAYDKGWR+RT+FKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:  114 DRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 193          
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: UPI0019670C2E (pre-mRNA-processing-splicing factor 8A-like n=1 Tax=Medicago truncatula TaxID=3880 RepID=UPI0019670C2E)

HSP 1 Score: 180 bits (456), Expect = 1.260e-55
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 0
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 80
            DRHTLAYDKGWRVR DFKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTD+IQALGG+EGILEHTLFKGTYFPTWEGLFWEK
Sbjct:   32 DRHTLAYDKGWRVRLDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGIEGILEHTLFKGTYFPTWEGLFWEK 111          
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A0S7F200_9TELE (PRP8 n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7F200_9TELE)

HSP 1 Score: 184 bits (467), Expect = 2.020e-55
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 80
            DRHTLAYDKGWRVRTDFKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:   70 DRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 149          
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A183EJP3_9BILA (U6-snRNA_bdg domain-containing protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183EJP3_9BILA)

HSP 1 Score: 178 bits (452), Expect = 2.170e-55
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 0
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 80
            DRHTLAYDKGWRVRT+FK YQIL+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLF+GTYFPTWEGLFWE+
Sbjct:   58 DRHTLAYDKGWRVRTEFKTYQILKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFRGTYFPTWEGLFWER 137          
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A2P8XBN0_BLAGE (Pre-mRNA-processing-splicing factor 8 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8XBN0_BLAGE)

HSP 1 Score: 182 bits (462), Expect = 5.530e-55
Identity = 76/80 (95.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 80
            DRHTLAYDKGWR+RT+FKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:  177 DRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 256          
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A183DN27_9BILA (Uncharacterized protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183DN27_9BILA)

HSP 1 Score: 178 bits (452), Expect = 7.520e-55
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 0
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 80
            DRHTLAYDKGWRVRT+FK YQIL+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLF+GTYFPTWEGLFWE+
Sbjct:  121 DRHTLAYDKGWRVRTEFKTYQILKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFRGTYFPTWEGLFWER 200          
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Match: A0A0R3TIL3_RODNA (Uncharacterized protein n=2 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3TIL3_RODNA)

HSP 1 Score: 182 bits (463), Expect = 9.060e-55
Identity = 77/80 (96.25%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 80
            DRHTLAYDKGWRVRT+FKQYQ+L+QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK
Sbjct:   24 DRHTLAYDKGWRVRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEK 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57356.13202.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I3L3Z8_HUMAN5.070e-5797.50Pre-mRNA-processing-splicing factor 8 (Fragment) n... [more]
A0A392Q2T9_9FABA2.580e-5695.00Pre-mRNA-processing-splicing factor 8-like (Fragme... [more]
A0A1S3GU36_DIPOR4.240e-5697.50pre-mRNA-processing-splicing factor 8-like n=2 Tax... [more]
A0A1B6JTR3_9HEMI1.060e-5595.00U6-snRNA_bdg domain-containing protein (Fragment) ... [more]
UPI0019670C2E1.260e-5593.75pre-mRNA-processing-splicing factor 8A-like n=1 Ta... [more]
A0A0S7F200_9TELE2.020e-5597.50PRP8 n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A183EJP3_9BILA2.170e-5593.75U6-snRNA_bdg domain-containing protein n=1 Tax=Gon... [more]
A0A2P8XBN0_BLAGE5.530e-5595.00Pre-mRNA-processing-splicing factor 8 n=1 Tax=Blat... [more]
A0A183DN27_9BILA7.520e-5593.75Uncharacterized protein n=1 Tax=Gongylonema pulchr... [more]
A0A0R3TIL3_RODNA9.060e-5596.25Uncharacterized protein n=2 Tax=Rodentolepis nana ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019580Pre-mRNA-processing-splicing factor 8, U6-snRNA-bindingPFAMPF10596U6-snRNA_bdgcoord: 17..80
e-value: 1.4E-26
score: 93.3
IPR027652Pre-mRNA-processing-splicing factor 8PANTHERPTHR11140PRE-MRNA SPLICING FACTOR PRP8coord: 1..81
NoneNo IPR availablePANTHERPTHR11140:SF1coord: 1..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57356contigH-elongata_contig57356:2388..3435 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57356.13202.1mRNA_H-elongata_contig57356.13202.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57356 2388..3435 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57356.13202.1 ID=prot_H-elongata_contig57356.13202.1|Name=mRNA_H-elongata_contig57356.13202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
DRHTLAYDKGWRVRTDFKQYQILRQNPFWWTHQRHDGKLWNLNNYRTDMI
QALGGVEGILEHTLFKGTYFPTWEGLFWEKVIVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019580Prp8_U6-snRNA-bd
IPR027652PRP8