prot_H-elongata_contig57329.13198.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig57329.13198.1
Unique Name	prot_H-elongata_contig57329.13198.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	217

Homology

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BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: D8LSF2_ECTSI (SDH1, succinate dehydrogenase subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF2_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 2.270e-115
Identity = 175/210 (83.33%), Postives = 196/210 (93.33%), Query Frame = 0

Query:    1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI PKK  DG + +HDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGDKVAEAPKS+TEKS+A++D+TRFADG TPVA+LRLKLQKEMQDHAAVYRTQESL EGV RVD VV +F ++ V D+SLIWNT+LIEAMELENLLSN+ACT+HAAEARKE+RGAHAREDFPDRLDD WMKHS+TYFDY+TGKTKV
Sbjct:  306 EVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVNDFSDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKV 515

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BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A6H5KSI2_9PHAE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI2_9PHAE)

HSP 1 Score: 346 bits (888), Expect = 2.830e-113
Identity = 174/210 (82.86%), Postives = 196/210 (93.33%), Query Frame = 0

Query:    1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI PKK  DG + +HDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGDKVAEAPK++TEKS+A++D+TRFADG TPVA+LRLKLQKEMQDHAAVYRTQESL EGV RVD VV +F ++ V D+SLIWNT+LIEAMELENLLSN+ACT+HAAEARKE+RGAHAREDFPDRLDD WMKHS+TYFDY+TGKTKV
Sbjct:  416 EVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKAQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVKDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKV 625

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BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A835YUP3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUP3_9STRA)

HSP 1 Score: 288 bits (736), Expect = 6.900e-91
Identity = 146/209 (69.86%), Postives = 175/209 (83.73%), Query Frame = 0

Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +V+ P+K+A+G ++ DAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKV +APK+ET++++ ++D  R+A G T  AELRLKLQ+ MQD+AAVYRTQE+L  GV  VD VV EF ++ V D+SLIWNT+LIE MEL NLL N+ACT+HAAEARKE+RGAHAREDF DR D  WMKH++  FD   GKT +
Sbjct:  384 EVVKPRKNANGDIDQDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVQDAPKAETDRALGALDDMRYARGQTSTAELRLKLQRVMQDNAAVYRTQETLAHGVVSVDAVVKEFGDVGVTDRSLIWNTDLIETMELRNLLGNAACTMHAAEARKESRGAHAREDFKDRDDVNWMKHTLATFDESKGKTHL 592

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BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A7S3ZYC3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=3 Tax=cellular organisms TaxID=131567 RepID=A0A7S3ZYC3_9STRA)

HSP 1 Score: 285 bits (730), Expect = 1.270e-89
Identity = 143/210 (68.10%), Postives = 172/210 (81.90%), Query Frame = 0

Query:    1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI  KK A G + +HDA+VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGD V   P+   +K++  +D  R + GPTP AE+R  +QK MQDHAAVYRTQESL EGV ++D VV  F+++ V+D+SLIWNT+L+E +EL NLL N+A T+HAAEARKE+RGAHARED PDRLDD+WMKH++TY+D  T KT V
Sbjct:  419 EVIHQKKDASGNVVDHDAVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDAVPPLPRDAGQKTLQDLDDVRHSSGPTPTAEIRRDMQKTMQDHAAVYRTQESLAEGVTKIDKVVDSFQDVGVSDRSLIWNTDLVETLELRNLLPNAAATMHAAEARKESRGAHAREDCPDRLDDDWMKHTMTYYDEATRKTSV 628

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BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: W7TSA7_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSA7_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.500e-82
Identity = 133/209 (63.64%), Postives = 170/209 (81.34%), Query Frame = 0

Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI+PKK ADG+++ D ++PGLFAAGEAACASVHGANRLGANSLLDIVVFGRA ALRIADIAKPGDKV   P    ++S+  +D+ RFA G T  A +R K+QK MQ+HAAVYRTQ+SL EG  ++D+V+  ++++ V D+SL+WNT+LIE++EL NLLSN+A T++AAEARKE+RGAHAREDF +R D  WM H+I  FDY+T KT +
Sbjct:  414 EVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTI 622

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BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: B8CCT7_THAPS (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCT7_THAPS)

HSP 1 Score: 263 bits (671), Expect = 5.160e-81
Identity = 131/209 (62.68%), Postives = 165/209 (78.95%), Query Frame = 0

Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI    +ADG+   D +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACA RIA+IAKPGD +A+AP      S+A +D+ RFA G TP + +R ++Q  MQD AAVYRT+E L EG + +D+VV  F +++V DKSLIWNT+L+E +EL NLL  +A T+H+AE RKE+RGAHA E++PDRLDDEWMKH++ YFD + GKTK+
Sbjct:  404 EVIRTDFNADGSFNSDVVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDAIADAPADVGMDSVAELDKLRFATGSTPTSVIRGEMQHLMQDKAAVYRTEELLAEGKKEIDEVVQSFNDVHVTDKSLIWNTDLVETLELRNLLGCAATTMHSAENRKESRGAHAHENYPDRLDDEWMKHTLAYFDEKEGKTKI 612

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BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A2R5G9I9_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9I9_9STRA)

HSP 1 Score: 262 bits (670), Expect = 5.680e-81
Identity = 137/209 (65.55%), Postives = 166/209 (79.43%), Query Frame = 0

Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            QV++P K      + D +VPGL+AAGEAACASVHGANRLGANSLLDIVVFGRACA  I +  KP  KV E P    E SIA++D+ R A+G TP A+LRL+LQK MQ+HAAV+RT E L EGV +VD+VV EF +I V D+SLIWN+++IE +EL+NLL N+ACT+HAAEARKE+RGAHA ED+PDR D EWMKH+IT+FD ETGK KV
Sbjct:  399 QVVNPTKD-----DPDRVVPGLYAAGEAACASVHGANRLGANSLLDIVVFGRACANHIGETLKPSKKV-ELPAGAGEDSIANLDKIRNANGSTPTADLRLRLQKTMQNHAAVFRTNEVLAEGVVKVDEVVQEFSDIKVTDRSLIWNSDVIETLELQNLLGNAACTMHAAEARKESRGAHAHEDYPDRNDKEWMKHTITHFDTETGKVKV 601

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BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: F0YDU4_AURAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU4_AURAN)

HSP 1 Score: 262 bits (670), Expect = 6.080e-81
Identity = 138/210 (65.71%), Postives = 161/210 (76.67%), Query Frame = 0

Query:    1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI      DG++ +HD +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIA+PG  V   P    EK+IA +D  RF+ GP P A++R  +QK MQDHAAVYRT ESL EG  ++   V  F +I V D+SLIWNT+LIE +EL NLL N+A T+ AAEARKE+RGAHARED PDRLDDEWMKH++ YFD  T KT V
Sbjct:  395 EVIRQVTGPDGSVIDHDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAEPGAPVPPLPADAAEKTIADVDAIRFSSGPRPTADVRKDMQKTMQDHAAVYRTAESLAEGCEKIQKNVEAFADIGVTDRSLIWNTDLIETIELRNLLPNAATTMFAAEARKESRGAHAREDTPDRLDDEWMKHTMCYFDEATNKTTV 604

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BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A7S2RM10_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RM10_9STRA)

HSP 1 Score: 261 bits (666), Expect = 3.030e-80
Identity = 131/209 (62.68%), Postives = 164/209 (78.47%), Query Frame = 0

Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI  KK+ADGT +HD+IVPGLFAAGE ACASVHGANRLGANSLLDIVVFGRACA RIA+IAKPG  V   PK   + SIA +D+ R+A G  P A LRL++Q+ MQ++AAVYRT E L EG  ++D VV +F+++  +D+SLIWNT+LIE +EL NLL N++ T+HAA  R E+RGAHARED PDR D+ WMKH++ YFD  TG++ V
Sbjct:  407 EVIRVKKNADGTEDHDSIVPGLFAAGEVACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGAPVPPLPKDAGDASIADLDKLRYAKGDVPTASLRLEMQQVMQENAAVYRTAEVLSEGCEKIDAVVDKFQHVGTSDRSLIWNTDLIETLELRNLLGNASTTMHAASQRTESRGAHAREDTPDRDDENWMKHTMAYFDESTGRSTV 615

[Close]

BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A7S4KAF0_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KAF0_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.190e-79
Identity = 127/212 (59.91%), Postives = 168/212 (79.25%), Query Frame = 0

Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEA---PKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +V+  K  + G  E D +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAD+A PGD + +A   P     +S+A +D+ R+ADG TP +E+R ++Q  MQDHAAVYRT E LEEG  ++D+VV  F ++ V D+SL+WNT+L+E +EL NLL+N++ T+H+A  RKE+RGAHA E++PDR D+EWMKH+++YF+ ETGK++V
Sbjct:  420 EVVRTKFDSKGEFEQDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADLAAPGDDIPDATGGPDGAGMQSLADLDKLRYADGSTPTSEIRGEMQAVMQDHAAVYRTSELLEEGAGKIDEVVQSFADVGVTDRSLVWNTDLVETLELRNLLANASTTMHSANVRKESRGAHAHENYPDRDDNEWMKHTVSYFNEETGKSEV 631

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot

BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LSF2_ECTSI	2.270e-115	83.33	SDH1, succinate dehydrogenase subunit 1 n=1 Tax=Ec...	[more]
A0A6H5KSI2_9PHAE	2.830e-113	82.86	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
A0A835YUP3_9STRA	6.900e-91	69.86	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
A0A7S3ZYC3_9STRA	1.270e-89	68.10	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
W7TSA7_9STRA	1.500e-82	63.64	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
B8CCT7_THAPS	5.160e-81	62.68	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
A0A2R5G9I9_9STRA	5.680e-81	65.55	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
F0YDU4_AURAN	6.080e-81	65.71	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
A0A7S2RM10_9STRA	3.030e-80	62.68	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]
A0A7S4KAF0_9STRA	1.190e-79	59.91	Succinate dehydrogenase [ubiquinone] flavoprotein ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015939	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal	PFAM	PF02910	Succ_DH_flav_C	coord: 99..209 e-value: 2.4E-36 score: 124.5
IPR036188	FAD/NAD(P)-binding domain superfamily	GENE3D	3.50.50.60		coord: 2..69 e-value: 4.2E-22 score: 80.4
IPR036188	FAD/NAD(P)-binding domain superfamily	SUPERFAMILY	51905	FAD/NAD(P)-binding domain	coord: 10..69
None	No IPR available	GENE3D	1.20.58.100		coord: 70..186 e-value: 5.9E-38 score: 131.7
None	No IPR available	PANTHER	PTHR11632	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	coord: 13..208
None	No IPR available	PANTHER	PTHR11632:SF51	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL	coord: 13..208
IPR003953	FAD-dependent oxidoreductase 2, FAD binding domain	PFAM	PF00890	FAD_binding_2	coord: 14..44 e-value: 1.2E-8 score: 34.4
IPR037099	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily	SUPERFAMILY	46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	coord: 90..204

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig57329	contig	H-elongata_contig57329:425..3610 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig57329.13198.1	mRNA_H-elongata_contig57329.13198.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig57329 425..3610 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig57329.13198.1 ID=prot_H-elongata_contig57329.13198.1|Name=mRNA_H-elongata_contig57329.13198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVF
GRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRL
KLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLI
EAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYF
DYETGKTKVMRWGRRG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015939	Fum_Rdtase/Succ_DH_flav-like_C
IPR036188	FAD/NAD-bd_sf
IPR003953	FAD-binding_2
IPR037099	Fum_R/Succ_DH_flav-like_C_sf