prot_H-elongata_contig56857.13138.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56857.13138.1
Unique Nameprot_H-elongata_contig56857.13138.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length127
Homology
[Close]
BLAST of mRNA_H-elongata_contig56857.13138.1 vs. uniprot
Match: D8LHR1_ECTSI (LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR1_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 8.510e-45
Identity = 79/126 (62.70%), Postives = 94/126 (74.60%), Query Frame = 0 
Query:    2 SAIYVPSVSRGMLLPSLDIHCVVEEGDEPVDPTPPGSHWLFRPLPFISWADLRSETVIIRNPSVFKATSLSGYTLSDHQRLHTYAFPEVCTIPARSSITLYCCPGSKLSEGELATLPRTALLWKNQ 127
            +A +VPSV R +LLP LD H V EE D P DPTPPGSHWLFRP PFI+ ADL +ETV IRNPSV++  +L+GYTL+D  + HTY FPE   + AR+S+TLYCCPG K SEG L  LP+  LLW NQ
Sbjct:    4 AAFHVPSVPRSLLLPGLDTHQVQEEDDVPTDPTPPGSHWLFRPPPFIAHADLEAETVTIRNPSVWRGANLAGYTLTDRLQRHTYHFPERFVLRARTSLTLYCCPG-KFSEGALHNLPQPFLLWHNQ 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56857.13138.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHR1_ECTSI8.510e-4562.70LTD domain-containing protein n=2 Tax=Ectocarpus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036415Lamin tail domain superfamilySUPERFAMILY74853Lamin A/C globular tail domaincoord: 48..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56857contigH-elongata_contig56857:349..2111 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56857.13138.1mRNA_H-elongata_contig56857.13138.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56857 349..2111 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56857.13138.1 ID=prot_H-elongata_contig56857.13138.1|Name=mRNA_H-elongata_contig56857.13138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MSAIYVPSVSRGMLLPSLDIHCVVEEGDEPVDPTPPGSHWLFRPLPFISW
ADLRSETVIIRNPSVFKATSLSGYTLSDHQRLHTYAFPEVCTIPARSSIT
LYCCPGSKLSEGELATLPRTALLWKNQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036415Lamin_tail_dom_sf