prot_H-elongata_contig56655.13111.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56655.13111.1
Unique Nameprot_H-elongata_contig56655.13111.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length143
Homology
BLAST of mRNA_H-elongata_contig56655.13111.1 vs. uniprot
Match: D7G240_ECTSI (Trafficking protein particle complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G240_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 5.150e-58
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 0
Query:   43 IRELVTKMSKDPAATGLHALKTGSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPIDGSPIRLRAFDARLEEYLRSLACFNS 142
            ++E+VTKMS DPA+ GLHALKT SYTLHHLETGSGLRFVLNTDNNAGDLRPTLR LYSGIFVEYVAKHPQFNP+DGSPIRL AFD+RLEEYLRSLACF S
Sbjct:   47 LKEVVTKMSTDPASAGLHALKTDSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRQLYSGIFVEYVAKHPQFNPVDGSPIRLPAFDSRLEEYLRSLACFKS 146          
BLAST of mRNA_H-elongata_contig56655.13111.1 vs. uniprot
Match: A0A7S2AMS8_9STRA (Trafficking protein particle complex subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMS8_9STRA)

HSP 1 Score: 122 bits (305), Expect = 7.940e-33
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 0
Query:   43 IRELVTKMSKDPAATGLHALKTGSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPIDGSPIRLRAFDARLEEYLRSLACFN 141
            I+ELV++MS  P   GLH LKT ++TLHHLET SGLRFVLNTD + GDLRP+LRH++S IFVEYV K+P ++ +   PI    F   L  YL SL+CF 
Sbjct:   46 IKELVSRMSSRPGTEGLHCLKTNNFTLHHLETASGLRFVLNTDGDTGDLRPSLRHIFSSIFVEYVIKNPLYDRLSTEPIDSPLFSRHLGVYLESLSCFR 144          
BLAST of mRNA_H-elongata_contig56655.13111.1 vs. uniprot
Match: A0A7S2RBL8_9STRA (Trafficking protein particle complex subunit n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBL8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 8.540e-29
Identity = 51/100 (51.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query:   43 IRELVTKMSKDPAATGLHALKTGSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPIDGSPIRLRAFDARLEEYLRSLACFNS 142
            I+E+V++M+   A  GL +++TG++TLHHLET +G RFVLNTD    DLR  L+H+YS IFVEYV K+P F+P+  + I +  FD+ L EY++ L+CF S
Sbjct:   46 IKEMVSRMTPRTADAGLSSIQTGNFTLHHLETVTGFRFVLNTDTATTDLRQNLQHIYSEIFVEYVLKNPLFDPMTSTSIEIPLFDSNLSEYIQLLSCFRS 145          
BLAST of mRNA_H-elongata_contig56655.13111.1 vs. uniprot
Match: A0A835ZQ36_9STRA (Trafficking protein particle complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ36_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.040e-27
Identity = 52/98 (53.06%), Postives = 64/98 (65.31%), Query Frame = 0
Query:   43 IRELVTKMSKDPAATGLHALKTGSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPIDGSPIRLRAFDARLEEYLRSLACF 140
            ++ELV KM        L +  T SYTL+  ET SGLRFVLNTDN AGDL   LRH+Y  IFV+ V KHP F P  G P++L  F+  LE+Y++SL CF
Sbjct:   45 LQELVGKMGGGDGKGALQSFTTDSYTLNFFETASGLRFVLNTDNRAGDLTAILRHIYGNIFVDLVVKHPMFEPKAGVPLQLPMFEEELEKYMKSLPCF 142          
BLAST of mRNA_H-elongata_contig56655.13111.1 vs. uniprot
Match: A0A485KP23_9STRA (Trafficking protein particle complex subunit n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485KP23_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.280e-21
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 0
Query:   43 IRELVTKMSKDPAATGLHALKTGS---YTLHHLETGSGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPIDGSPIRLRAFDARLEEYLRSLACFN 141
            ++E + KMS   +    H+LKT     YT HHLET SGLRF+L+TDN +GDL+  L+H+Y  ++VE V K+P  +     PI+ + F A +++Y+ SL CF 
Sbjct:   20 LKEFLRKMSPATSTPQTHSLKTFKTDVYTCHHLETPSGLRFILSTDNASGDLQDALQHMYGNLYVELVTKNPVHDAKSTKPIKCKLFRASIKQYIESLPCFK 121          
BLAST of mRNA_H-elongata_contig56655.13111.1 vs. uniprot
Match: A0A397CY63_9STRA (Trafficking protein particle complex subunit n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CY63_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.630e-21
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 0
Query:   43 IRELVTKMSKDPAATGLHALKTGS---YTLHHLETGSGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPIDGSPIRLRAFDARLEEYLRSLACFN 141
            ++E + KMS   +    H+LKT     YT HHLET SGLRF+L+TDN +GDL+  L+++Y  ++VE V K+P  +     PI+ + F A ++ Y+ SLACF 
Sbjct:   29 LKEFLRKMSPPTSTPQTHSLKTFKTDVYTCHHLETPSGLRFILSTDNQSGDLQEALQYMYGNLYVELVTKNPVHDARSTKPIKCKLFRANIKAYIESLACFK 130          
BLAST of mRNA_H-elongata_contig56655.13111.1 vs. uniprot
Match: A0A067CRD6_SAPPC (Trafficking protein particle complex subunit n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CRD6_SAPPC)

HSP 1 Score: 91.3 bits (225), Expect = 1.020e-20
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 0
Query:   43 IRELVTKMSKDPAATGLHALKT---GSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPIDGSPIRLRAFDARLEEYLRSLACFN 141
            ++E + KM+   + T   +LKT    +YT HHLET SGLRF+L +DNN GDL+  L+HLY  ++VE V K+P  +     PI+ + F   +  Y+ SL CF 
Sbjct:   46 LKEFLRKMAPTASTTSSQSLKTFKTDTYTCHHLETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVHDAKSTKPIKCKLFRHSVRHYMESLPCFR 147          
BLAST of mRNA_H-elongata_contig56655.13111.1 vs. uniprot
Match: A0A6A4ZH59_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZH59_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.900e-20
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   43 IRELVTKMSKDPAATGLHALKTGS---YTLHHLETGSGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPIDGSPIRLRAFDARLEEYLRSLACFNS 142
            ++E + KMS   +    H+LKT     YT HHLET SGLRF+L+TDN +GDL+  L+++Y  ++VE V K+P  +     P++ + F A ++ Y+ SLACF S
Sbjct:   62 LKEFLRKMSPPTSTPQTHSLKTFKTDVYTCHHLETPSGLRFILSTDNQSGDLQEALQYMYGNLYVELVTKNPVHDARSTKPVKCKLFRANIKAYIESLACFKS 164          
BLAST of mRNA_H-elongata_contig56655.13111.1 vs. uniprot
Match: A0A8K1FMZ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMZ9_PYTOL)

HSP 1 Score: 89.7 bits (221), Expect = 5.520e-20
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 0
Query:   45 ELVTKMSKDPAATGLHALKTGSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPIDGSPIRLRAFDARLEEYLRSLACFN 141
            ELV   +  PA+ GL   +T +YT HH ET SGLRF+L TDN AGDL   LRHLYS ++++YV  +P  +      I  + F A++++Y+  LA F 
Sbjct:   63 ELVDGTASTPASEGLQRYQTNNYTCHHYETPSGLRFILMTDNQAGDLSAVLRHLYSHLYIDYVVNNPLSDVQTSKTINNQLFRAQVKQYIEGLASFR 159          
BLAST of mRNA_H-elongata_contig56655.13111.1 vs. uniprot
Match: A0A1V9YMM8_9STRA (Trafficking protein particle complex subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YMM8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.480e-19
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 0
Query:   43 IRELVTKMSKDPAAT---GLHALKTGSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPIDGSPIRLRAFDARLEEYLRSLACFN 141
            ++E + KM+   ++     L   KT +YT HH+ET SGLRF+L +DNNA DL   L+HLYS ++VE V K+P ++     PI  + F + + +Y+ SL  F 
Sbjct:   29 LKEFLRKMAPTASSVQSQSLKIFKTDTYTCHHMETASGLRFILTSDNNAADLHDVLQHLYSNLYVELVTKNPVYDARSTKPITCKLFRSSVRQYIESLPAFK 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56655.13111.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G240_ECTSI5.150e-5888.00Trafficking protein particle complex subunit n=2 T... [more]
A0A7S2AMS8_9STRA7.940e-3357.58Trafficking protein particle complex subunit n=1 T... [more]
A0A7S2RBL8_9STRA8.540e-2951.00Trafficking protein particle complex subunit n=2 T... [more]
A0A835ZQ36_9STRA3.040e-2753.06Trafficking protein particle complex subunit n=1 T... [more]
A0A485KP23_9STRA1.280e-2143.14Trafficking protein particle complex subunit n=5 T... [more]
A0A397CY63_9STRA1.630e-2143.14Trafficking protein particle complex subunit n=1 T... [more]
A0A067CRD6_SAPPC1.020e-2042.16Trafficking protein particle complex subunit n=3 T... [more]
A0A6A4ZH59_9STRA1.900e-2042.72Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A8K1FMZ9_PYTOL5.520e-2044.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YMM8_9STRA1.480e-1940.20Trafficking protein particle complex subunit n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 28..137
e-value: 5.6E-12
score: 55.8
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 49..136
e-value: 4.7E-16
score: 59.0
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249SYNBINDINcoord: 43..140
NoneNo IPR availableGENE3D3.30.450.70coord: 41..142
e-value: 1.3E-23
score: 85.5
NoneNo IPR availablePANTHERPTHR23249:SF16TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1coord: 43..140
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 48..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56655contigH-elongata_contig56655:1513..2537 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56655.13111.1mRNA_H-elongata_contig56655.13111.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56655 455..2545 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56655.13111.1 ID=prot_H-elongata_contig56655.13111.1|Name=mRNA_H-elongata_contig56655.13111.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MPLLSRVEPAPKHAGERGGRGRGATPHVRHALLSQGKAGEGQIRELVTKM
SKDPAATGLHALKTGSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRHLYS
GIFVEYVAKHPQFNPIDGSPIRLRAFDARLEEYLRSLACFNS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007233TRAPPC
IPR011012Longin-like_dom_sf