prot_H-elongata_contig56640.13109.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56640.13109.1
Unique Nameprot_H-elongata_contig56640.13109.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length403
Homology
BLAST of mRNA_H-elongata_contig56640.13109.1 vs. uniprot
Match: A0A6H5L5D8_9PHAE (PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D8_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 2.950e-102
Identity = 213/430 (49.53%), Postives = 250/430 (58.14%), Query Frame = 0
Query:    1 VGPGARLPLPLRWSRVEDIRLRP------LPYVGKANASPPIN---PKNIPSIPSRGFGEEGQGAMTVYDYGYSDCSVLVPASRAGEKELGLMMSVIPWVACHPDGSYDRDLATMTTIITPAQKPLFLFLEGVDAHAGDGETTLDTREAGRSHNKTGGISGAGTSVHSLRPSTSVGERLIARST-----------STPTPVVSTKPANANEARNSLGSLLSASARGALSLRPLEVIVYASLSFRNLLPVGVGWRVVGARGDPGARVAEGWLGPGEGAHVLEANTMAVKPSFSFKVAGFDWTSPRQVSVKEI---TRRGVTQSS----------RDTGTPGASGKVDDVGEHGKELRQRPGIGLENIPCRDLANRVLYLSAEATSPRMNSVHVTIFAGFWVRNLSGLPLTLGEPIPTRASSFELQEERLSE 397
            V PG RLPLPLRWSR EDIRLRP              +S P N   PK +  I     G   QG  +   Y YSDCSVLVPA+RAGE ELG   +VIPWVAC+P        A   T    ++KPLFLFLEG+DA+  DG         G S         + T   S         R++A ST           + PT VV        ++  S G  ++A     LSLRPLEV+VYASLSFRNLLPVGVGWRV GARGD GAR+AEGWL PG+G HVLEANTMA+ PS S KVAGFDWTSP QV+V E+   TR G T S           R    PG  G V    EH       PGI L+++PCR+++N++LYLS EA S RMNSV VT++AGFWVRNLSGLPLTLGEP+    S  EL EERL++
Sbjct:  167 VAPGGRLPLPLRWSRAEDIRLRPWXXXXXXXXXXXXRSSSPSNTSMPKKVVQIHDLAEGSGDQGERS---YEYSDCSVLVPAARAGEGELGATTAVIPWVACNPSQPSANSPADGDT--NASRKPLFLFLEGLDANDPDGGRHGAAIPGGGSRQNASSNPWSRTRRRSRDGGGRSSGRVVANSTLHGRQRQRPDAAFPTRVV--------DSPRSAGISMAA-----LSLRPLEVVVYASLSFRNLLPVGVGWRVAGARGDAGARLAEGWLAPGDGVHVLEANTMAMAPSLSLKVAGFDWTSPHQVAVAELMRPTREGSTGSDGXXXXXXXXXRGRELPG--GGVSTTSEH------VPGISLQSVPCRNMSNQILYLSVEAASVRMNSVLVTVYAGFWVRNLSGLPLTLGEPVSRGLSPLELHEERLAD 570          
BLAST of mRNA_H-elongata_contig56640.13109.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 2.110e-97
Identity = 210/429 (48.95%), Postives = 251/429 (58.51%), Query Frame = 0
Query:    1 VGPGARLPLPLRWSRVEDIRLRPLPYV-------GKANASPPIN--PKNIPSIPSRGFGEEGQGAMTVYDYGYSDCSVLVPASRAGEKELGLMMSVIPWVACHPDGSYDRDLATMTTIITPAQKPLFLFLEGVDAHAGDGETTLDTREAGRSHNKTGGISGAGTSVHSLRPSTSVGERLIARST-----------STPTPVVSTKPANANEARNSLGSLLSASARGALSLRPLEVIVYASLSFRNLLPVGVGWRVVGARGDPGARVAEGWLGPGEGAHVLEANTMAVKPSFSFKVAGFDWTSPRQVSVKEI---TRRGVTQSS---------RDTGTPGASGKVDDVGEHGKELRQRPGIGLENIPCRDLANRVLYLSAEATSPRMNSVHVTIFAGFWVRNLSGLPLTLGEPIPTRASSFELQEERLSE 397
            V PG RLPLPLRWSR EDIRLRP P         G+ ++SP  N  PK +  +     GE G      Y+Y  SDCSVLVPA+RAGE ELG   +VIPWVAC+P        A   T  T  +KPLFLFLEG+DA+  +G         G S  K      + T   S         R++A +T           S PT VV        ++  S G+ ++A     LSLRPLEV+VYASLSFRNLLPVGVGWRV GARGD GAR+AEGWL PG+G HVLEAN MA+ PS SFKVAGFDWT P QV+V E+   TR G T S                     V    EH       PGI L+++PCR+++N++LYLS EA S RMNSV VT+F+GFWVRNLSGLPLTLGEP+    S  EL EERL++
Sbjct:  283 VAPGGRLPLPLRWSRAEDIRLRPWPRSQGGGFGDGRRSSSPSNNSMPKKVVEVHHLA-GESGDQGERSYEY--SDCSVLVPAARAGEGELGATTAVIPWVACNPSQPSTNSPADGDT--TACRKPLFLFLEGLDANDPEGGGHGAAIPGGGSRRKASSDPWSKTRRTSRDGGGRSNSRVVANATLHGRQRQRPDASFPTRVV--------DSPRSAGNPMAA-----LSLRPLEVVVYASLSFRNLLPVGVGWRVAGARGDAGARLAEGWLTPGDGVHVLEANAMAMAPSLSFKVAGFDWTPPHQVAVAELMRPTRAGSTDSDGXXXXXXXXXXXXXXXXXXXVPTTSEH------VPGISLQSVPCRNMSNQILYLSVEAASVRMNSVLVTVFSGFWVRNLSGLPLTLGEPVSRGLSPLELHEERLAD 687          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56640.13109.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5D8_9PHAE2.950e-10249.53PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FMF6_ECTSI2.110e-9748.95SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56640contigH-elongata_contig56640:373..3185 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56640.13109.1mRNA_H-elongata_contig56640.13109.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56640 373..3185 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56640.13109.1 ID=prot_H-elongata_contig56640.13109.1|Name=mRNA_H-elongata_contig56640.13109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=403bp
VGPGARLPLPLRWSRVEDIRLRPLPYVGKANASPPINPKNIPSIPSRGFG
EEGQGAMTVYDYGYSDCSVLVPASRAGEKELGLMMSVIPWVACHPDGSYD
RDLATMTTIITPAQKPLFLFLEGVDAHAGDGETTLDTREAGRSHNKTGGI
SGAGTSVHSLRPSTSVGERLIARSTSTPTPVVSTKPANANEARNSLGSLL
SASARGALSLRPLEVIVYASLSFRNLLPVGVGWRVVGARGDPGARVAEGW
LGPGEGAHVLEANTMAVKPSFSFKVAGFDWTSPRQVSVKEITRRGVTQSS
RDTGTPGASGKVDDVGEHGKELRQRPGIGLENIPCRDLANRVLYLSAEAT
SPRMNSVHVTIFAGFWVRNLSGLPLTLGEPIPTRASSFELQEERLSEHTS
WR*
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