prot_H-elongata_contig56443.13093.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56443.13093.1
Unique Nameprot_H-elongata_contig56443.13093.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length164
Homology
[Close]
BLAST of mRNA_H-elongata_contig56443.13093.1 vs. uniprot
Match: D8LMW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW5_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 4.870e-12
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 0 
Query:   71 LFGIKRKVKVDLQENFSGKVVDTSGPMSGMLGGDANGLFEVIERNKKKDVE 121
            L GIKRKVKV+++ENFSGKVV+ +G  + M G DAN LF+VIE+NKKK  E
Sbjct:   67 LHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSDANALFDVIEKNKKKAAE 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56443.13093.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMW5_ECTSI4.870e-1264.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 33..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..163
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 20..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56443contigH-elongata_contig56443:392..1846 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56443.13093.1mRNA_H-elongata_contig56443.13093.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56443 377..2129 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56443.13093.1 ID=prot_H-elongata_contig56443.13093.1|Name=mRNA_H-elongata_contig56443.13093.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MGRAESSSGTASQSRLVSSCAVLKLAFVSALLGERYAAPVAAFCATTSSR
AFASRSGGGGGAAARRSCFELFGIKRKVKVDLQENFSGKVVDTSGPMSGM
LGGDANGLFEVIERNKKKDVEAAAVAEAARHAAEEGASDKNLELEGADGG
DDDEEGHEEEDLA*
back to top