prot_H-elongata_contig56240.13071.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56240.13071.1
Unique Nameprot_H-elongata_contig56240.13071.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length231
Homology
BLAST of mRNA_H-elongata_contig56240.13071.1 vs. uniprot
Match: D7FVM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM6_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.000e-49
Identity = 102/207 (49.28%), Postives = 128/207 (61.84%), Query Frame = 0
Query:   39 FVEHRIVDHVDQLKQL-------DGSGARVPPPHIFCLPAPGGDVCLIVNEKGAYHAVRDSFPPLGLRVSQTGVVDTQVDAIGDTLFGTRFHLSDGTVRGPWCPGG-TAGPFL-------------------RLVRRLPRHIRQLIRCRRPLRS----YREDSPPLT--MSTRRLEVLTVSERPDGSLMLLLPSLPAV----GQGDA 208
            F +H +V+  DQL +L       +     VPPPH+F +PAPGGDVCL+V+EK  Y+A+RD FPP G+ VSQTGVVD+QVDAIGD+LFGTRF+L DGTVRGPWCPGG TAGP L                   R + RL  H+  + + RR   S    +R  S P     +T  LEVLTV+E+PDGSL + LP  P+V    G GD+
Sbjct:   58 FFQHTLVESTDQLDKLQQPRHHGNECSGPVPPPHLFRIPAPGGDVCLVVDEKKNYYAMRDCFPPFGVPVSQTGVVDSQVDAIGDSLFGTRFNLKDGTVRGPWCPGGGTAGPLLLRLARHRRHRLFNQCIGVARSINRLTHHLFSISKQRRARGSWATYFRPPSSPNANERTTTTLEVLTVTEQPDGSLTVALPRCPSVLAPGGGGDS 264          
BLAST of mRNA_H-elongata_contig56240.13071.1 vs. uniprot
Match: A0A6H5JUG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG0_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.430e-43
Identity = 93/200 (46.50%), Postives = 118/200 (59.00%), Query Frame = 0
Query:   35 PLPNFVEHRIVDHVDQLKQLDGSGAR---------VPPPHIFCLPAPGGDVCLIVNEKGAYHAVRDSFPPLGLRVSQTGVVDTQVDAIGDTLFGTRFHLSDGTVRGPWCPGG-TAGPFL-------------------RLVRRLPRHIRQLIRCRRP----LRSYREDSPPLTM---STRRLEVLTVSERPDGSLMLLLP 198
            P   F ++ +V+  DQL+                 VPPPH+F +PAPGGDVCL+V+E  +Y+A+RD FPP G+ VSQTGVVD+QVDAIGD+LFGTRF+L DGTVRGPWCPGG TAGP L                   R +  L  H+    + RR       S+R  S P  +   +T  LEVLTV+E+ DGSL + LP
Sbjct:   53 PTTEFFQYTLVESTDQLEXXXXXXXXXXGNEWFEPVPPPHLFRIPAPGGDVCLVVDENKSYYAMRDCFPPFGVPVSQTGVVDSQVDAIGDSLFGTRFNLEDGTVRGPWCPGGGTAGPLLLWLARHRRHRLFTLRIGVARSINHLTHHLFLFSKQRRARGSWATSFRPPSSPNFIEKTTTTTLEVLTVTEQLDGSLTVALP 252          
BLAST of mRNA_H-elongata_contig56240.13071.1 vs. uniprot
Match: A0A836CM18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM18_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.120e-20
Identity = 54/98 (55.10%), Postives = 64/98 (65.31%), Query Frame = 0
Query:   47 HVDQLKQLDGSGARVPPPHIFCLPAPGGDVCLIVNEKGAYHAVRDSFPPLGLRVSQTGVVDTQVDAIGDTLFGTRFHLSDGTVRGPWCPGGTAGPFLR 144
            H DQL  L   GA  PPP +F +P   G VCL+V+E G  HA+RDS PPLG  +S TGVVD+++  I D  FGTRF+LS G  RG  CPGGTA   LR
Sbjct:  658 HKDQLAPL---GAP-PPPLVFSIPVLCGTVCLVVDENGKSHAMRDSCPPLGSPISATGVVDSEIGVIEDLRFGTRFYLSSGAPRGRLCPGGTAPRALR 751          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56240.13071.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVM6_ECTSI1.000e-4949.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUG0_9PHAE1.430e-4346.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CM18_9STRA1.120e-2055.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..230
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..31
score: 0.511
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56240contigH-elongata_contig56240:1374..2711 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56240.13071.1mRNA_H-elongata_contig56240.13071.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56240 726..2747 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56240.13071.1 ID=prot_H-elongata_contig56240.13071.1|Name=mRNA_H-elongata_contig56240.13071.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
MYFTARIPSTGSLSFMLLTCCFLYLLKSSTAFFIPLPNFVEHRIVDHVDQ
LKQLDGSGARVPPPHIFCLPAPGGDVCLIVNEKGAYHAVRDSFPPLGLRV
SQTGVVDTQVDAIGDTLFGTRFHLSDGTVRGPWCPGGTAGPFLRLVRRLP
RHIRQLIRCRRPLRSYREDSPPLTMSTRRLEVLTVSERPDGSLMLLLPSL
PAVGQGDAKITSACSNTWWTRRCGLSGYDH*
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