prot_H-elongata_contig55877.13016.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55877.13016.1
Unique Nameprot_H-elongata_contig55877.13016.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length79
Homology
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.110e-34
Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQEV 74
            MEKLNRIQSKM E ALLSPENLLLCAPTGAGKTNVAL+ MLHEIGQHR+EDG+IDV++FKIVYVAPMKALVQEV
Sbjct:  525 MEKLNRIQSKMQEAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQEV 598          
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: A0A7S0Z8P7_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z8P7_9CHLO)

HSP 1 Score: 118 bits (296), Expect = 2.800e-29
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQEV 74
            M+ LNRIQS+++E ALLSPEN+LLCAPTGAGKTNVA++ +LHE+G HRR DGSID  AFKIVYVAPMKALV E+
Sbjct:  500 MKSLNRIQSRVYECALLSPENMLLCAPTGAGKTNVAMMTILHEVGLHRRRDGSIDTSAFKIVYVAPMKALVAEI 573          
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: A0A454XRE1_OSTTA (Sec63 Brl domain-domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XRE1_OSTTA)

HSP 1 Score: 117 bits (294), Expect = 5.210e-29
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQEV 74
            M+ LNR+QS+++E ALLSPEN+LLCAPTGAGKTNVA+L +LHEIG HRR DG++D  AFKIVYVAPMKALV E+
Sbjct:  493 MKSLNRVQSRVYECALLSPENMLLCAPTGAGKTNVAVLTILHEIGLHRRRDGTVDTSAFKIVYVAPMKALVSEI 566          
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: C1N183_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N183_MICPC)

HSP 1 Score: 117 bits (292), Expect = 9.710e-29
Identity = 57/79 (72.15%), Postives = 70/79 (88.61%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQE-VSSLG 78
            M+ LNR+QS+++E A+LSPENLLLCAPTGAGKTNVA+L +LHE+  HRR+DGS+D+ AFKIVYVAPMKALV E V +LG
Sbjct:  526 MKSLNRVQSQVYETAMLSPENLLLCAPTGAGKTNVAMLTILHELALHRRQDGSLDLSAFKIVYVAPMKALVAEMVGNLG 604          
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: A4S4L6_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S4L6_OSTLU)

HSP 1 Score: 116 bits (291), Expect = 1.320e-28
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQEV 74
            M+ LNRIQS+++E ALLSPEN+LLCAPTGAGKTN A+L +LHE+G HRR DGS+D  AFKIVYVAPMKALV E+
Sbjct:  493 MKTLNRIQSRVYECALLSPENMLLCAPTGAGKTNCAMLTILHEVGLHRRRDGSVDTSAFKIVYVAPMKALVAEI 566          
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: A0A7S0GP72_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GP72_MICPS)

HSP 1 Score: 116 bits (290), Expect = 1.810e-28
Identity = 57/79 (72.15%), Postives = 69/79 (87.34%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQE-VSSLG 78
            M+ LNR+QS+++E A+LSPEN+LLCAPTGAGKTNVA+L +LHEIG HRR DGS++  AFKIVYVAPMKALV E V +LG
Sbjct:  522 MKTLNRVQSQVYETAMLSPENMLLCAPTGAGKTNVAMLTILHEIGSHRRPDGSLNTNAFKIVYVAPMKALVAEMVGNLG 600          
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: E1Z6L6_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z6L6_CHLVA)

HSP 1 Score: 114 bits (286), Expect = 6.240e-28
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQE-VSSLGR 79
            M+ LNRIQS++ + AL S EN+L+CAPTGAGKTNVA+LAMLHEIG HRREDGSID  AFKI+YVAPMKALV E V + G+
Sbjct:  241 MKSLNRIQSRVCDTALYSAENMLVCAPTGAGKTNVAMLAMLHEIGLHRREDGSIDTAAFKIIYVAPMKALVAEMVGNFGK 320          
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: A0A7S0KUK6_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0KUK6_MICPS)

HSP 1 Score: 114 bits (285), Expect = 8.560e-28
Identity = 56/79 (70.89%), Postives = 68/79 (86.08%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQE-VSSLG 78
            M+ LNR+QS+++  A+LSPEN+LLCAPTGAGKTNVA+L +LHEIG HR+ DG+ID  AFKIVYVAPMKALV E V +LG
Sbjct:  520 MKSLNRVQSQVYNTAMLSPENMLLCAPTGAGKTNVAMLTILHEIGLHRKPDGTIDTSAFKIVYVAPMKALVAEMVGNLG 598          
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: K8YVZ6_NANGC (Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVZ6_NANGC)

HSP 1 Score: 114 bits (284), Expect = 1.170e-27
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQE 73
            M  LNR+QSKM   AL S ENLLLCAPTGAGKTNVA+L +L+EIGQH REDGS+D++AFKIVYVAPMKALVQE
Sbjct:   72 MTMLNRVQSKMCSSALYSSENLLLCAPTGAGKTNVAMLCILNEIGQHLREDGSVDLDAFKIVYVAPMKALVQE 144          
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: W7TFU8_9STRA (U5 small nuclear ribonucleoprotein helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFU8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.170e-27
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 0
Query:    1 MEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQE 73
            M  LNR+QSKM   AL S ENLLLCAPTGAGKTNVA+L +L+EIGQH REDGS+D++AFKIVYVAPMKALVQE
Sbjct:  511 MTMLNRVQSKMCSSALYSSENLLLCAPTGAGKTNVAMLCILNEIGQHLREDGSVDLDAFKIVYVAPMKALVQE 583          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHW4_ECTSI1.110e-3489.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0Z8P7_9CHLO2.800e-2975.68Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A454XRE1_OSTTA5.210e-2974.32Sec63 Brl domain-domain-containing protein n=2 Tax... [more]
C1N183_MICPC9.710e-2972.15Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A4S4L6_OSTLU1.320e-2874.32Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
A0A7S0GP72_MICPS1.810e-2872.15Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
E1Z6L6_CHLVA6.240e-2872.50Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S0KUK6_MICPS8.560e-2870.89Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
K8YVZ6_NANGC1.170e-2778.08Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochlor... [more]
W7TFU8_9STRA1.170e-2778.08U5 small nuclear ribonucleoprotein helicase n=3 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 2..74
e-value: 1.7E-26
score: 94.9
NoneNo IPR availablePANTHERPTHR12131:SF12coord: 1..75
NoneNo IPR availablePANTHERPTHR12131ATP-DEPENDENT RNA AND DNA HELICASEcoord: 1..75
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 6..74
e-value: 2.9E-10
score: 40.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55877contigH-elongata_contig55877:619..855 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55877.13016.1mRNA_H-elongata_contig55877.13016.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55877 619..879 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55877.13016.1 ID=prot_H-elongata_contig55877.13016.1|Name=mRNA_H-elongata_contig55877.13016.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRRE
DGSIDVEAFKIVYVAPMKALVQEVSSLGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase