prot_H-elongata_contig558.13012.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig558.13012.1
Unique Nameprot_H-elongata_contig558.13012.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length148
Homology
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 7.280e-34
Identity = 62/141 (43.97%), Postives = 90/141 (63.83%), Query Frame = 0
Query:    8 GYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMGTTPFQMMTGRPP 148
            GY ++LV+MDD+S F W+E   +C  ++ A+ +L  C + GVP+ + S+  THF   +M  +   LGV   F V N  WS+GT ERM REV++T +AVL ER R   +W  ++  VQWA ++AYRER  +TP+ +M GR P
Sbjct:   64 GYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAP 204          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 6.900e-33
Identity = 61/141 (43.26%), Postives = 90/141 (63.83%), Query Frame = 0
Query:    8 GYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMGTTPFQMMTGRPP 148
            GY ++LV+MDD+S F W+E   +C  ++ A+ +L  C + GVP+ + S+  THF   +M  +   LGV   F V N  WS+GT ERM RE+++T +AVL ER R   +W  ++  VQWA ++AYRER  +TP+ +M GR P
Sbjct:  511 GYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAP 651          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 8.310e-33
Identity = 61/141 (43.26%), Postives = 90/141 (63.83%), Query Frame = 0
Query:    8 GYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMGTTPFQMMTGRPP 148
            GY ++LV+MDD+S F W+E   +C  ++ A+ +L  C + GVP+ + S+  THF   +M  +   LGV   F V N  WS+GT ERM RE+++T +AVL ER R   +W  ++  VQWA ++AYRER  +TP+ +M GR P
Sbjct: 1287 GYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAP 1427          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 4.690e-31
Identity = 59/143 (41.26%), Postives = 92/143 (64.34%), Query Frame = 0
Query:    6 DRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMGTTPFQMMTGRPP 148
            + G+K++LV+MDD+S +VWLE   +C   + A+ +L  C   GVP+ + S+  +HF   MM  + + LGV  +F V N  WS+GT ERM REV++T +A++ E      +W  ++  VQWA ++A+RER G+TP+ +M GR P
Sbjct: 1387 EEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAP 1529          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A225VEA8_9STRA (Chromodomain protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VEA8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.530e-23
Identity = 56/144 (38.89%), Postives = 80/144 (55.56%), Query Frame = 0
Query:    3 GLVDRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAF-HSAYRERMGTTPFQMMTG 145
            G +D   ++VLV+ DD S++VWL    S   +    ++    A+FGV +A+  + GTHF  K ++ +   LGV HHF      W++GTVE +NREVL+  RA+LSE    P EWP V+ +VQ    H+      G  P   MTG
Sbjct:  240 GEIDTQREYVLVIKDDASKYVWLLVCTSADAETTFESLFDWFAAFGVCRAWVFDQGTHFKNKTIEALQHALGVHHHFTTAQCPWANGTVEMVNREVLRCCRALLSEWRMQPREWPRVIKIVQMVLNHTPSPVVGGVAPITAMTG 383          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6A3VZH3_9STRA (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VZH3_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.490e-22
Identity = 56/141 (39.72%), Postives = 79/141 (56.03%), Query Frame = 0
Query:    8 GYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMG-TTPFQMMTGRP 147
            G K+VLVL D +S +V L   +      A RA++     FGV   +TS+ G HF  ++++ +   LG  HHF      W++GTVE +NREVLK  +A+LSER     +WP +L VVQ A +    +R+G TTP    T  P
Sbjct:    7 GLKYVLVLKDGMSGYVELVACLQATADTAYRALIDWFKRFGVVHQWTSDQGAHFRNQIIEQLQRALGAHHHFVTAYTPWANGTVEVVNREVLKAMKALLSERRLFVRDWPALLPVVQAALNGMPADRLGGTTPLTAFTALP 147          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6G0RX23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RX23_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.000e-22
Identity = 60/143 (41.96%), Postives = 83/143 (58.04%), Query Frame = 0
Query:    6 DRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMG-TTPFQMMTGRP 147
            +RG K+VLVL D +S FV L   VS     A +++L     FGV   + S+ G HF  ++M+ +S  LG  HHF      W++GTVE +NREVLK+ +A+LSER     +WP VL VVQ A ++   +R+G  TP    T  P
Sbjct:  192 ERGLKYVLVLKDGMSGFVELVACVSATSDQAYQSLLDWFKRFGVVHQWISDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFTALP 334          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6A3W606_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3W606_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.380e-22
Identity = 60/143 (41.96%), Postives = 83/143 (58.04%), Query Frame = 0
Query:    6 DRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMG-TTPFQMMTGRP 147
            +RG K+VLVL D +S FV L   VS     A +++L     FGV   + S+ G HF  ++M+ +S  LG  HHF      W++GTVE +NREVLK+ +A+LSER     +WP VL VVQ A ++   +R+G  TP    T  P
Sbjct:  475 ERGLKYVLVLKDGMSGFVELVACVSATSDQAYQSLLDWFKRFGVVHQWISDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFTALP 617          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A6A3HSR4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3HSR4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.280e-22
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 0
Query:    6 DRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMG-TTPFQMMT 144
            +RG K+VLVL D +S FV L   VS     A +++L     FGV   + S+ G HF  ++M+ +S  LG  HHF      W++GTVE +NREVLK+ +A+LSER     +WP VL VVQ A ++   +R+G  TP    T
Sbjct:    5 ERGLKYVLVLKDGMSGFVELVACVSATSDQAYQSLLDWFKRFGVVHQWISDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFT 144          
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Match: A0A2P4XSG7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XSG7_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.400e-21
Identity = 56/144 (38.89%), Postives = 77/144 (53.47%), Query Frame = 0
Query:    3 GLVDRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVPKAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLKTFRAVLSERHRPPSEWPLVLGVVQWAF-HSAYRERMGTTPFQMMTG 145
            G  D   ++VLV+ DD S+FVWL    +         ++   ASFGV + + S+ GTHF  K+++ +   LG  HHF      W++GTVE +NREVL+  RA+LSE      EWP V+ +VQ    HS      G  P   MTG
Sbjct:  139 GKSDSDLEYVLVIKDDASKFVWLMPTDAATADNTFECLMTWFASFGVVRWWVSDQGTHFKNKVIEGLQHALGAHHHFTTARCPWANGTVEVVNREVLRCCRALLSEWRLQSGEWPRVIKIVQMVLNHSPCSAIDGVAPVTAMTG 282          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig558.13012.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVS6_9PHAE7.280e-3443.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE6.900e-3343.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE8.310e-3343.26Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE4.690e-3141.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225VEA8_9STRA5.530e-2338.89Chromodomain protein n=1 Tax=Phytophthora megakary... [more]
A0A6A3VZH3_9STRA1.490e-2239.72Integrase catalytic domain-containing protein n=4 ... [more]
A0A6G0RX23_9STRA3.000e-2241.96Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6A3W606_9STRA3.380e-2241.96Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A3HSR4_9STRA4.280e-2242.14Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A2P4XSG7_9STRA5.400e-2138.89Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 7..99
e-value: 4.8E-10
score: 39.7
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..147
score: 14.41
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..148
e-value: 6.7E-31
score: 109.0
NoneNo IPR availablePANTHERPTHR33064FAMILY NOT NAMEDcoord: 7..148
NoneNo IPR availablePANTHERPTHR33064:SF26coord: 7..148
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 8..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig558contigH-elongata_contig558:5959..6402 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig558.13012.1mRNA_H-elongata_contig558.13012.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig558 5959..7634 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig558.13012.1 ID=prot_H-elongata_contig558.13012.1|Name=mRNA_H-elongata_contig558.13012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MGGLVDRGYKHVLVLMDDVSRFVWLEEAVSCLMKVAARAVLKCCASFGVP
KAFTSNGGTHFTGKMMQIVSSRLGVVHHFGVTNVSWSHGTVERMNREVLK
TFRAVLSERHRPPSEWPLVLGVVQWAFHSAYRERMGTTPFQMMTGRPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf