prot_H-elongata_contig55734.13001.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55734.13001.1
Unique Nameprot_H-elongata_contig55734.13001.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
BLAST of mRNA_H-elongata_contig55734.13001.1 vs. uniprot
Match: A0A6H5KI81_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI81_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 5.670e-33
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 0
Query:    1 MGALERGKLHKKIVAECKKANTCFHESCYGLNGAVKKISGSQTLKLVHDRYRGKPPKEVLQELAEEMTTAASGNPEILKHLGNA 84
            MGALERG LHKKIV ECKK+ +CFHESCY +NG VKK++GSQTLKLVHDRY+GKPP  VLQEL  +M  AA  N EI KHLG A
Sbjct:  179 MGALERGNLHKKIVTECKKSTSCFHESCYAVNGTVKKVTGSQTLKLVHDRYKGKPPGNVLQELTADMKVAAQANREIPKHLGMA 262          
BLAST of mRNA_H-elongata_contig55734.13001.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.980e-32
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 0
Query:    1 MGALERGKLHKKIVAECKKANTCFHESCYGLNGAVKKISGSQTLKLVHDRYRGKPPKEVLQELAEEMTTAASGNPEILKHLGNA 84
            MGALERG LHKKIV ECKK+ +CFHESCY +NG VKK++GSQTLKLVHDR++GKPP  VLQEL  +M  AA  N EI KHLG A
Sbjct:  181 MGALERGNLHKKIVTECKKSTSCFHESCYAVNGTVKKVTGSQTLKLVHDRFKGKPPGNVLQELTADMKVAAQANREIPKHLGMA 264          
BLAST of mRNA_H-elongata_contig55734.13001.1 vs. uniprot
Match: A0A7S2BSJ8_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSJ8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 8.630e-14
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0
Query:    1 MGALERGKLHKKIVAECKKANTCFHESCYGLNGAVKKISGSQTLKLVHDRYRGKPPKEVLQELAEEMTTAASGNPEILKHLGNA 84
            + AL +  + KKI+ +CKKA++C    C   NG VKKISG QTLKL H+RY+GK            +T A + NPE+ +H+G A
Sbjct:  140 LDALTKAAIWKKIIIQCKKAHSC--PRCLAFNGTVKKISGVQTLKLTHERYKGKLAAHGAAAFQSNLTNAVNFNPEVKQHMGKA 221          
BLAST of mRNA_H-elongata_contig55734.13001.1 vs. uniprot
Match: B7G2E6_PHATC (DNA-directed RNA polymerase subunit n=5 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2E6_PHATC)

HSP 1 Score: 64.7 bits (156), Expect = 2.940e-10
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0
Query:    3 ALERGKLHKKIVAECKKANTCFHESCYGLNGAVKKISGSQTLKLVHDRYRGKPPKEVLQELAEEMTTAASGNPEI 77
            AL +  L KK+V +CKK   C H  C G NG VKKI+G  TLK+VH+RY+G+  ++ L EL   +  +   N ++
Sbjct:   92 ALSKAALFKKVVEKCKKVRVCPH--CGGHNGTVKKITGVPTLKIVHERYKGRNAEDELDELIANLEVSLKMNKDV 164          
BLAST of mRNA_H-elongata_contig55734.13001.1 vs. uniprot
Match: A0A7S2Q4C6_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=3 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q4C6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.330e-10
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    3 ALERGKLHKKIVAECKKANTCFHESCYGLNGAVKKISGSQTLKLVHDRYRGKPPKEVLQELAEEMTTAASGNPEI 77
            AL +  + KK++ +CKK  TC +  C   NG VKK+ G+ TLK+VH++Y+G+  +  L+EL E +  A   NPEI
Sbjct:  153 ALGKASIFKKVIEKCKKMRTCPY--CNKPNGTVKKVHGAPTLKIVHEKYKGRHMEGDLEELIESLQGAMQINPEI 225          
BLAST of mRNA_H-elongata_contig55734.13001.1 vs. uniprot
Match: A0A7S4NGV3_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGV3_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.620e-9
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 0
Query:   11 KKIVAECKKANTCFHESCYGLNGAVKKISGSQTLKLVHDRYRGKPPKEVLQELAEEMTTAASGNPEILK 79
            KK++ +CKKA  C H  C+  NG VKKISG  TLK++H+RY+G+  ++ + +L   +  A   N E ++
Sbjct:  167 KKVIDKCKKARACPH--CHASNGTVKKISGVPTLKIIHERYKGRHMEDEIDDLVHSLQNAMVSNGENIR 233          
BLAST of mRNA_H-elongata_contig55734.13001.1 vs. uniprot
Match: A0A836CEF0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.700e-9
Identity = 26/67 (38.81%), Postives = 43/67 (64.18%), Query Frame = 0
Query:    1 MGALERGKLHKKIVAECKKANTCFHESCYGLNGAVKKISGSQTLKLVHDRYRGKPPKEVLQELAEEM 67
            + AL R  + KK+V +CKKA  C + +C   NG VKK+ G+ +LKL+H++Y+G+     ++E   +M
Sbjct:  150 LDALGRAAVFKKVVTKCKKAVKCTNPACGAYNGTVKKVIGAASLKLIHEKYKGRHADGTMEEFRADM 216          
BLAST of mRNA_H-elongata_contig55734.13001.1 vs. uniprot
Match: A0A7S1ZKV2_9STRA (DNA-directed RNA polymerase subunit n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKV2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.330e-8
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 0
Query:    4 LERGKLHKKIVAECKKANTCFHESCYGLNGAVKKISGSQTLKLVHDRYRGKPPKEVLQELAEEMTTAASGNPEI 77
            L +    KK++ +CKK+  C H  C+  NG VKKI+G+ TLK+VH+RY+G+  +E    L   +  +   N EI
Sbjct:  152 LAKAATFKKVIDKCKKSKACPH--CHEANGTVKKITGAPTLKIVHERYKGRHMEEEFNNLTISLQNSMRKNNEI 223          
BLAST of mRNA_H-elongata_contig55734.13001.1 vs. uniprot
Match: A0A448Z7A2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7A2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.140e-8
Identity = 24/68 (35.29%), Postives = 47/68 (69.12%), Query Frame = 0
Query:   11 KKIVAECKKANTCFHESCYGLNGAVKKISGSQTLKLVHDRYRGKPPKEVLQELAEEMTTAASGNPEIL 78
            KK++ +CKK+  C +  C  +NG VKKI+G+ TLK+VH++++G+  ++ L +L + ++ A   N +++
Sbjct:  163 KKVIEKCKKSKQCPY--CGAVNGTVKKITGAPTLKIVHEKFKGRHSEDELDQLMDNLSMAMDHNKDLI 228          
BLAST of mRNA_H-elongata_contig55734.13001.1 vs. uniprot
Match: B8C4M1_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4M1_THAPS)

HSP 1 Score: 57.8 bits (138), Expect = 8.140e-8
Identity = 27/74 (36.49%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    4 LERGKLHKKIVAECKKANTCFHESCYGLNGAVKKISGSQTLKLVHDRYRGKPPKEVLQELAEEMTTAASGNPEI 77
            L +  + KK++ +CKKA+ C +  C+  NG VKK+ G+ TLK++H+RY+G+  ++ +++L + +  A   N EI
Sbjct:  159 LGKASVFKKVLDKCKKAHQCPY--CHKPNGTVKKVHGAPTLKIIHERYKGRHMEDEVEDLLQSLQGAMITNLEI 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55734.13001.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KI81_9PHAE5.670e-3372.62DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D7FU80_ECTSI1.980e-3271.43DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S2BSJ8_9STRA8.630e-1444.05DNA-directed RNA polymerase subunit (Fragment) n=1... [more]
B7G2E6_PHATC2.940e-1042.67DNA-directed RNA polymerase subunit n=5 Tax=Phaeod... [more]
A0A7S2Q4C6_9STRA5.330e-1042.67DNA-directed RNA polymerase subunit (Fragment) n=3... [more]
A0A7S4NGV3_9STRA2.620e-940.58DNA-directed RNA polymerase subunit n=1 Tax=Odonte... [more]
A0A836CEF0_9STRA6.700e-938.81DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S1ZKV2_9STRA2.330e-839.19DNA-directed RNA polymerase subunit n=5 Tax=Ditylu... [more]
A0A448Z7A2_9STRA8.140e-835.29DNA-directed RNA polymerase subunit n=1 Tax=Pseudo... [more]
B8C4M1_THAPS8.140e-836.49DNA-directed RNA polymerase subunit n=1 Tax=Thalas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55734contigH-elongata_contig55734:1600..2319 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55734.13001.1mRNA_H-elongata_contig55734.13001.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55734 1600..2412 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55734.13001.1 ID=prot_H-elongata_contig55734.13001.1|Name=mRNA_H-elongata_contig55734.13001.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MGALERGKLHKKIVAECKKANTCFHESCYGLNGAVKKISGSQTLKLVHDR
YRGKPPKEVLQELAEEMTTAASGNPEILKHLGNA
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