prot_H-elongata_contig55516.12968.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55516.12968.1
Unique Nameprot_H-elongata_contig55516.12968.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length202
Homology
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BLAST of mRNA_H-elongata_contig55516.12968.1 vs. uniprot
Match: A0A6H5KG66_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG66_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.750e-16
Identity = 64/125 (51.20%), Postives = 71/125 (56.80%), Query Frame = 0 
Query:    1 VCRKIGEKLRQPAAEQAAHVLIAVYARPCPLAAGFAGDGDDGGAHSDDEAIGRDPPPLPTAGDRVA--GAGLMATENFDGEELEKNNMRRRRGGVLHDQTTSIRHILHTFRPEERLGEVRLGFHE 123
            VCRKIGEKLRQ  AEQ  +VLIA+YARP    +   G G +G  H    + G         GD V   GAG  A    D  EL  +  RRRRG   H   +SIRHILHTFR EERLGEVRLG  E
Sbjct:  181 VCRKIGEKLRQLPAEQNEYVLIAIYARPSRNVSDTGG-GSNGPGHR--HSAGVADRGAAVGGDEVDNDGAGYTAGGVRDEHELRHDGRRRRRGEEEHQ--SSIRHILHTFRSEERLGEVRLGLPE 300
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BLAST of mRNA_H-elongata_contig55516.12968.1 vs. uniprot
Match: D8LCW3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW3_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.220e-10
Identity = 56/127 (44.09%), Postives = 62/127 (48.82%), Query Frame = 0 
Query:    1 VCRKIGEKLRQPAAEQAAHVLIAVYARPCPLAAGFA--GDGDDGGAHSDDEAIGRDPPPLPTAGDRVAG--AGLMATENFDGEELEKNNMRRRRGGVLHDQTTSIRHILHTFRPEERLGEVRLGFHE 123
            VCRKIGEKLRQ  AEQ  +VLIA+YARP    +  +  G G  G  H    + G         GD V    AG  A    D                 H   +SIRHILHTFR EERLGEVRLG  E
Sbjct:  209 VCRKIGEKLRQLPAEQNEYVLIAIYARPARNVSSLSDTGGGSTGPGHR--HSAGVADRGATVGGDEVDNYSAGYTAGGGRDXXXXXXXXXXXXXXXXXHQ--SSIRHILHTFRSEERLGEVRLGLPE 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55516.12968.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG66_9PHAE1.750e-1651.20PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LCW3_ECTSI1.220e-1044.09PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55516contigH-elongata_contig55516:419..2701 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55516.12968.1mRNA_H-elongata_contig55516.12968.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55516 419..2701 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55516.12968.1 ID=prot_H-elongata_contig55516.12968.1|Name=mRNA_H-elongata_contig55516.12968.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
VCRKIGEKLRQPAAEQAAHVLIAVYARPCPLAAGFAGDGDDGGAHSDDEA
IGRDPPPLPTAGDRVAGAGLMATENFDGEELEKNNMRRRRGGVLHDQTTS
IRHILHTFRPEERLGEVRLGFHELEPPPPPPPPSLDATVSPLAPRWSDES
LAALLKAGADSGGGRDADGDREGRDDGEDHRGFQGGGRGTGMLRGRGSSR
SG
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