mRNA_H-elongata_contig55516.12968.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55516.12968.1
Unique NamemRNA_H-elongata_contig55516.12968.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55516.12968.1 vs. uniprot
Match: A0A6H5KG66_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG66_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.750e-16
Identity = 64/125 (51.20%), Postives = 71/125 (56.80%), Query Frame = 1 
Query:    1 VCRKIGEKLRQPAAEQAAHVLIAVYARPCPLAAGFAGDGDDGGAHSDDEAIGRDPPPLPTAGDRVA--GAGLMATENFDGEELEKNNMRRRRGGVLHDQTTSIRHILHTFRPEERLGEVRLGFHE 369
            VCRKIGEKLRQ  AEQ  +VLIA+YARP    +   G G +G  H    + G         GD V   GAG  A    D  EL  +  RRRRG   H   +SIRHILHTFR EERLGEVRLG  E
Sbjct:  181 VCRKIGEKLRQLPAEQNEYVLIAIYARPSRNVSDTGG-GSNGPGHR--HSAGVADRGAAVGGDEVDNDGAGYTAGGVRDEHELRHDGRRRRRGEEEHQ--SSIRHILHTFRSEERLGEVRLGLPE 300
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BLAST of mRNA_H-elongata_contig55516.12968.1 vs. uniprot
Match: D8LCW3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW3_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.220e-10
Identity = 56/127 (44.09%), Postives = 62/127 (48.82%), Query Frame = 1 
Query:    1 VCRKIGEKLRQPAAEQAAHVLIAVYARPCPLAAGFA--GDGDDGGAHSDDEAIGRDPPPLPTAGDRVAG--AGLMATENFDGEELEKNNMRRRRGGVLHDQTTSIRHILHTFRPEERLGEVRLGFHE 369
            VCRKIGEKLRQ  AEQ  +VLIA+YARP    +  +  G G  G  H    + G         GD V    AG  A    D                 H   +SIRHILHTFR EERLGEVRLG  E
Sbjct:  209 VCRKIGEKLRQLPAEQNEYVLIAIYARPARNVSSLSDTGGGSTGPGHR--HSAGVADRGATVGGDEVDNYSAGYTAGGGRDXXXXXXXXXXXXXXXXXHQ--SSIRHILHTFRSEERLGEVRLGLPE 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55516.12968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG66_9PHAE1.750e-1651.20PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LCW3_ECTSI1.220e-1044.09PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55516contigH-elongata_contig55516:419..2701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue2.7e-10
Seed eggNOG ortholog2880.D8LCW3
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs28P6I@1,2QVTE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size608
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930904.7403936-CDS-H-elongata_contig55516:418..7581622930904.7403936-CDS-H-elongata_contig55516:418..758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55516 419..758 -
1691679618.8795497-CDS-H-elongata_contig55516:418..7581691679618.8795497-CDS-H-elongata_contig55516:418..758Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55516 419..758 -
1622930904.7589467-CDS-H-elongata_contig55516:2435..27011622930904.7589467-CDS-H-elongata_contig55516:2435..2701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55516 2436..2701 -
1691679618.8925958-CDS-H-elongata_contig55516:2435..27011691679618.8925958-CDS-H-elongata_contig55516:2435..2701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55516 2436..2701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55516.12968.1prot_H-elongata_contig55516.12968.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55516 419..2701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55516.12968.1

>prot_H-elongata_contig55516.12968.1 ID=prot_H-elongata_contig55516.12968.1|Name=mRNA_H-elongata_contig55516.12968.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
VCRKIGEKLRQPAAEQAAHVLIAVYARPCPLAAGFAGDGDDGGAHSDDEA
IGRDPPPLPTAGDRVAGAGLMATENFDGEELEKNNMRRRRGGVLHDQTTS
IRHILHTFRPEERLGEVRLGFHELEPPPPPPPPSLDATVSPLAPRWSDES
LAALLKAGADSGGGRDADGDREGRDDGEDHRGFQGGGRGTGMLRGRGSSR
SG
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mRNA from alignment at H-elongata_contig55516:419..2701-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55516.12968.1 ID=mRNA_H-elongata_contig55516.12968.1|Name=mRNA_H-elongata_contig55516.12968.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2283bp|location=Sequence derived from alignment at H-elongata_contig55516:419..2701- (Himanthalia elongata Himel1 dioecious)
GTGTGCCGCAAGATCGGGGAGAAGCTGCGGCAGCCGGCCGCGGAGCAGGC
CGCGCACGTCCTCATCGCGGTCTACGCCCGCCCCTGTCCCCTTGCCGCCG
GTTTTGCTGGCGATGGCGATGACGGTGGTGCTCACAGCGACGACGAGGCG
ATTGGCAGAGATCCGCCGCCCCTTCCGACGGCGGGGGACAGAGTGGCCGG
CGCCGGACTCATGGCAACCGAGAACTTTGACGGGGAAGAGCTGGAGAAGA
ACAATATGAGAAGGAGGTAGGTTTGTGTGTGAATGGTAAAGAGGCGTTTA
GAGGAGAGGGTGGGAGGGTAAGGCGGCCGGTGTTGTCCCGTCGCTTTTAT
GTGCCGAGCGACGGGGGTAACCAGGACATGCGGTTGTCGAGCTCTAGAGC
TGCTTCACTCCTTTTGTTCCCTATTGTTCATAGAGCAAAAAATGAAAAAG
GAAAAGCAACGGAGTTGGGAATCGGCTCAATTCGCATAGCATAATGGAAA
AACTAAAACTAAACTAAAATCCCTTGAGTTCAGCCTTTTCCCACTGTTAA
AAGGGGCGCGCGGGGTTTCCTATGCTAAAATAAGGCCGCTTCTGAGGCTG
TCGTAGAGGATGGACCGCTTCACTTCCTGCCGACAGCTATTTGTACTTTA
GCGAGACCTTTCTGTAGTGTTACCACCAAAAGAACATTTCATGTGAAGAC
TAAATTTGTATAAATCTTTCAATTATTTTTTTGCATGGCATGCCAACGTG
CTTCTATGGTAAGCATAACATGTGTTAGTGGTGTACAGTATCAAATAATA
CTTATAATTTATACCTATATATAGATATACTTCGATTATACTTTTTTCTC
TTTGTAGCTGTAGTATTTTCCGGAACTCGCGCATCCTAATTCCTAACGGC
CGGGTCCAATCAATGGGAGGCGGTGAAGGGGGGGGGGGATATCCCCGAAA
ATATTTCCTCGGTCTGGGGGTGTAATACAGTGACCCCTAGCCTACTGTAG
CCCTAAATTTATAGCAAGACCTATATGTATTTTAGCACGTTTTTTGTGTT
GCAGTCATCGGCCGAGCAGCTCAATGGGACAATCTGGCTGGAATATCGGT
CAGCAAAGTTGGACCATTAACCATTATTGTCGACACGGGGTATAGTTTAA
TACAGTAGGTGTCGATTAGGAGTGACTGCTGAACTTGCATCATCGCTATT
TTTGAAAAAAATGTTGGGAGGCGTGAACCAACCAGGGAGATATAGATATA
GTTGATTGTTGATTGTTTCCCTTGGGACCACAGGCGGCGGCGGGATAGGC
AACGTTACAGTAGCTGGGGTGGAAAATTTGGTAACTTCTAGTAGTCTAAT
AATAGTAATAAATACTTCGCTCAATGGTCTCTACCACTACCTCATCGGAA
GAAGGTGAAATATTAATTAAATTTAATTAAATGAAGTACCAACCTTTCTG
CCAATGAGCCCCCCTCCCATCCATCCCGCCGCCTATGGGCCTCACACAAT
CCATCAACCCGTTTACCTCTCCCCGTTTGGTTCACGCCTCCCTACAATTT
TTTAATCGCGATGGTGCAAGTTCAACAGTCACTTCAACGCCTCGTGTTAA
CGAATGGCGGAATTTTGCGTACTCCCGTTCCGCTCCAGTAACATACCTGA
GGGGATCTTTCCGTTAGACTTACTTGGTACATAAGTATATACCGGTATAT
ATATAGAGAGAGAGAGTGGGAGAGGGGTGCGGTGGGGGGTTGCAACCTTT
TAAAGATATGGAAAATTCTAAGATATGCTTAACTAGCATTGATCTACGGG
CATAGACCCCACAAATTTAAATTCTTCGCAGTTCGCTCTGAGCGCGTTTT
CCGGTACTCACTACTCACACAATCTCTCGCGACCTCGTTCTTTCTCTATC
TTTAACTTTTCTCCCCCTTCCCCCCCTCTCCGCTCCATCAAAGGCGCGGA
GGCGTCCTCCATGACCAGACAACCAGCATCAGACATATCCTGCACACGTT
CCGCCCTGAGGAACGACTGGGCGAGGTCCGATTGGGGTTCCACGAGCTCG
AGCCCCCTCCGCCACCGCCGCCACCCTCGCTGGACGCCACGGTCTCGCCT
TTGGCACCTCGATGGTCGGACGAGAGTCTCGCAGCTCTTCTGAAAGCCGG
GGCAGACAGCGGAGGTGGTAGAGATGCGGATGGGGATCGGGAGGGTCGCG
ACGACGGCGAGGACCACCGGGGTTTCCAGGGAGGGGGGCGAGGGACGGGG
ATGTTGCGCGGTAGGGGTAGCAGCCGAAGTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig55516:419..2701-

>mRNA_H-elongata_contig55516.12968.1 ID=mRNA_H-elongata_contig55516.12968.1|Name=mRNA_H-elongata_contig55516.12968.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig55516:419..2701- (Himanthalia elongata Himel1 dioecious)
GTGTGCCGCAAGATCGGGGAGAAGCTGCGGCAGCCGGCCGCGGAGCAGGC
CGCGCACGTCCTCATCGCGGTCTACGCCCGCCCCTGTCCCCTTGCCGCCG
GTTTTGCTGGCGATGGCGATGACGGTGGTGCTCACAGCGACGACGAGGCG
ATTGGCAGAGATCCGCCGCCCCTTCCGACGGCGGGGGACAGAGTGGCCGG
CGCCGGACTCATGGCAACCGAGAACTTTGACGGGGAAGAGCTGGAGAAGA
ACAATATGAGAAGGAGGTGTGCCGCAAGATCGGGGAGAAGCTGCGGCAGC
CGGCCGCGGAGCAGGCCGCGCACGTCCTCATCGCGGTCTACGCCCGCCCC
TGTCCCCTTGCCGCCGGTTTTGCTGGCGATGGCGATGACGGTGGTGCTCA
CAGCGACGACGAGGCGATTGGCAGAGATCCGCCGCCCCTTCCGACGGCGG
GGGACAGAGTGGCCGGCGCCGGACTCATGGCAACCGAGAACTTTGACGGG
GAAGAGCTGGAGAAGAACAATATGAGAAGGAGGCGCGGAGGCGTCCTCCA
TGACCAGACAACCAGCATCAGACATATCCTGCACACGTTCCGCCCTGAGG
AACGACTGGGCGAGGTCCGATTGGGGTTCCACGAGCTCGAGCCCCCTCCG
CCACCGCCGCCACCCTCGCTGGACGCCACGGTCTCGCCTTTGGCACCTCG
ATGGTCGGACGAGAGTCTCGCAGCTCTTCTGAAAGCCGGGGCAGACAGCG
GAGGTGGTAGAGATGCGGATGGGGATCGGGAGGGTCGCGACGACGGCGAG
GACCACCGGGGTTTCCAGGGAGGGGGGCGAGGGACGGGGATGTTGCGCGG
TAGGGGTAGCAGCCGAAGTGGGGCGCGGAGGCGTCCTCCATGACCAGACA
ACCAGCATCAGACATATCCTGCACACGTTCCGCCCTGAGGAACGACTGGG
CGAGGTCCGATTGGGGTTCCACGAGCTCGAGCCCCCTCCGCCACCGCCGC
CACCCTCGCTGGACGCCACGGTCTCGCCTTTGGCACCTCGATGGTCGGAC
GAGAGTCTCGCAGCTCTTCTGAAAGCCGGGGCAGACAGCGGAGGTGGTAG
AGATGCGGATGGGGATCGGGAGGGTCGCGACGACGGCGAGGACCACCGGG
GTTTCCAGGGAGGGGGGCGAGGGACGGGGATGTTGCGCGGTAGGGGTAGC
AGCCGAAGTGGG
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