prot_H-elongata_contig55475.12962.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55475.12962.1
Unique Nameprot_H-elongata_contig55475.12962.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length594
Homology
BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: D8LJ51_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 9.650e-77
Identity = 193/397 (48.61%), Postives = 236/397 (59.45%), Query Frame = 0
Query:  186 RVVNVQNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQNAKRGAACGATSISAAGGGGDEAEDSAALTPFASTNQTGVKSTAPPAAEERTLPFSHLAGAGAGAIA---NGRSRVQSSSAVDDFGACGAQPTQKSWVMEDALGTSKSSLSARQQPQSSLAVVGSEVVKPGGGVALMPTVAVPAAVAAVPLGTPLASVVGAGTTGV------------------------LEATSRALSHVNYEKVFRTVPMPMAIANVNGNLVDCNARLTQATGFRREEALFLSIFDLIADPFLQHTFSMISSILSLRGVA-DPPFFQVLGKRRDGS-SAGVVQISIVQDDALRPLHFCICIMENTA 553
            +   VQN+RRLERNAREQKRSLKISQRIE+LRRML++FGVDVKASKS+VLSEATDYIAHLQRQHAQSEAERAR+L LL N++  AA                                          +R        GAG G +    +  + + +  ++DD G  G +PT        A+  +++ +     P       G E + PG      P+++  A   A   G P+A    AG                            L AT+RALSHVNYE+VFRT+PMPMAIANVNGNLVDCN RLTQ TGFR+EEALF++IFDL+ADPFLQHTFSMISSILS+RGV  +PPFFQV GK  +G+   GVVQIS V DD LRP+HFCICI+++ A
Sbjct:  263 KAPTVQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSR--AASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGGDR--------GAGVGVVVERPSSNTMLDTLLSLDDDGDMG-RPTS-------AMTAARAMVFPPPTPPQQ----GEEQIVPG-----FPSLSATARRGAD--GMPVAPSAAAGAAAXXXGRAXXXXXXXXXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPPFFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPA 630          
BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A835Z815_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z815_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.050e-20
Identity = 102/365 (27.95%), Postives = 144/365 (39.45%), Query Frame = 0
Query:  190 VQNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQNAKRGAACGATSISAAGGGGDEAEDSAALTPFASTNQTGVKSTAPPAAEERTLPFSHLAGAGAGAIANGRSRVQSSSAVDDFGACGAQPTQKSWVMEDALGTSKSSLSARQQPQSSLAVVGSEVVKPGGGVALMPTVAVPAAVAAVPLGTPLASVVGAGTTGVLEATSRALSHVNYEKVFRTVPMPMAIANVNGNLVDCNARLTQATGFRREEALFLSIFDLIADPFLQHTFSMISSILSLRGVADPPFFQ------VLGKRRDGSSAGVVQISIVQDDALRPLHFCICI 548
            V ++RRLERNAREQ+RSLKISQ+I+ELR +L + GV VK+SKS++L EAT  I  LQR+ A  E ER  LL L+Q                                                                   +G S  Q+                                          A VG                                                    ++Y+ +F    +P+A+ +VNGN+VDCNAR+   TG+RREE L L++F+L+AD FLQ +F++IS +L++ G A     Q      +  K RDG   GV+ I++V+D+ LRP  F I +
Sbjct:   64 VVDKRRLERNAREQRRSLKISQKIDELRALLRQSGVMVKSSKSNILQEATQLICALQRRQALLEGERNHLLQLVQGL-----------------------------------------------------------------SGSSSAQAXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXASVG----------------------------------------------------MDYQLIFHNAAIPLAVGSVNGNIVDCNARMCAFTGYRREELLALTVFNLVADAFLQQSFALISGMLTVAGAAAAAAQQRGAHVDMPCKLRDGQPGGVLSIALVRDELLRPRFFAISL 304          
BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A835YRU1_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.260e-20
Identity = 98/357 (27.45%), Postives = 137/357 (38.38%), Query Frame = 0
Query:  192 NRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQNAKRGAACGATSISAAGGGGDEAEDSAALTPFASTNQTGVKSTAPPAAEERTLPFSHLAGAGAGAIANGRSRVQSSSAVDDFGACGAQPTQKSWVMEDALGTSKSSLSARQQPQSSLAVVGSEVVKPGGGVALMPTVAVPAAVAAVPLGTPLASVVGAGTTGVLEATSRALSHVNYEKVFRTVPMPMAIANVNGNLVDCNARLTQATGFRREEALFLSIFDLIADPFLQHTFSMISSILSLRGVADPP--FFQVLGKRRDGSSAGVVQISIVQDDALRPLHFCI 546
            ++RRLERNAREQKRSLKISQRI+ELR +L + G+ VK SKS VL E T+ I  L RQ    EAERA +L L+Q    G                                                               G ++                                             A VG                                                    ++Y+ +F    +P+A+ ++NGN+V+CN+R+  ATGFRR+E L L++F+L+AD +LQ +F++IS  LS    A  P     +  K RDG   GV+ +S+V+DD +RP  F I
Sbjct:   19 DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAG---------------------------------------------------------------GNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVG----------------------------------------------------MDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAI 260          
BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7S1XXW7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXW7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.370e-7
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 0
Query:  191 QNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQNAKRGAACGATSISAAGGGGDEAEDSAALTPFAS-TNQTGVK 305
            + +RR ERN REQKRSLKIS++I+EL  +LT  G  VKA+KSS+L EA  YI HLQ   A+ E ER++ + +L         GA+ IS    G D+A   A++    S ++ TG K
Sbjct:   99 EKKRRQERNHREQKRSLKISRKIDELHEILTDSGRMVKANKSSILREAFSYIMHLQGVLARKEYERSQFVNILTTN------GASGISGIKDGFDDANFKASIAALMSDSDATGGK 208          
BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7S0GE46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GE46_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.260e-6
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 0
Query:  189 NVQNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDV-KASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQNAKRGA 270
            N+   +R ERNARE++RS +IS +I+ELR +L+  GV V K +KSSVL+EA +YI  LQ+   +SE ER++L+  +Q    GA
Sbjct:   15 NLNEEKRGERNAREKERSFRISCQIDELRNLLSMGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEMERSQLVQQIQMIGAGA 97          
BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7S2S9S4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9S4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.190e-5
Identity = 39/76 (51.32%), Postives = 57/76 (75.00%), Query Frame = 0
Query:  190 VQNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDV-KASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQ 264
            VQ+ +R ERNARE++RS +IS++I+ELR +L+  GV V K +KSSVLSEA +YI  LQ+   +SE +R +L+  +Q
Sbjct:  280 VQDNKREERNAREKERSFRISRQIDELRSLLSSGGVIVPKGTKSSVLSEAANYIRMLQQHQYRSEIDRHQLIQQMQ 355          
BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7R9U539_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U539_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.460e-5
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 0
Query:  191 QNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLL 263
            + RRR ERN REQ+RSLKIS++I+EL  +LT  G +VK +KS++L++A  YI +LQ   A+ E ER + + +L
Sbjct:  154 EKRRRKERNQREQRRSLKISKKIDELHEILTGSGRNVKPNKSAILNDAHQYIQYLQSTMARKEFERNQFVDVL 226          
BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7S3KX76_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KX76_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.360e-5
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 0
Query:  186 RVVNVQNRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDV-KASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQ 264
            R   +  R+R+ERNARE++RS +IS++I ELR +L+  GV V K +KSSVL+EA +YI  LQ+   +SE +R +L+  +Q
Sbjct:  227 RKKRLDERKRVERNAREKERSFRISKQINELRGLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLIQQMQ 306          
BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7S4ABX4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABX4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.790e-5
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = 0
Query:  194 RRLERNAREQKRSLKISQRIEELRRMLTKFGVDV-KASKSSVLSEATDYIAHLQRQHAQSEAERARLLTLLQNAKRGA 270
            +R ERNARE++RS +IS++I ELR +L+  GV V K +KSSVL+EA +YI  LQ+ H +SE +R +L+  +Q    GA
Sbjct:  312 KREERNAREKERSFRISKQINELRSLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHHYRSEIDRHQLVQQVQRIGSGA 389          
BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Match: A0A7S2CTA7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTA7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.400e-5
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 0
Query:  192 NRRRLERNAREQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHAQSEA 254
            ++RRL+RNAREQ+RS KI+ +I++LR++L   G  VK++KSSVLSE  DYI  LQ++    EA
Sbjct:  460 DKRRLDRNAREQRRSKKITSQIDQLRQVLRAAGRPVKSNKSSVLSETADYIRDLQKKRQALEA 522          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55475.12962.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LJ51_ECTSI9.650e-7748.61N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECT... [more]
A0A835Z815_9STRA1.050e-2027.95BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YRU1_9STRA1.260e-2027.45BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S1XXW7_9STRA1.370e-744.83Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0GE46_9STRA3.260e-648.19Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2S9S4_9STRA1.190e-551.32Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7R9U539_9STRA1.460e-549.32Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3KX76_9STRA4.360e-547.50Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4ABX4_9STRA4.790e-550.00Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2CTA7_9STRA5.400e-553.97Hypothetical protein n=2 Tax=Florenciella parvula ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 193..213
NoneNo IPR availableCOILSCoilCoilcoord: 235..262
NoneNo IPR availableGENE3D3.30.450.20coord: 434..547
e-value: 3.0E-7
score: 32.0
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 199..251
e-value: 8.0E-10
score: 48.6
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 194..246
e-value: 3.0E-11
score: 43.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 193..245
score: 13.611
IPR000014PAS domainTIGRFAMTIGR00229TIGR00229coord: 439..526
e-value: 1.1E-7
score: 30.0
IPR000014PAS domainPROSITEPS50112PAScoord: 436..479
score: 9.395
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 186..271
e-value: 5.7E-13
score: 50.6
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 192..261
IPR035965PAS domain superfamilySUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 440..544

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55475contigH-elongata_contig55475:165..3840 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55475.12962.1mRNA_H-elongata_contig55475.12962.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55475 165..3840 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55475.12962.1 ID=prot_H-elongata_contig55475.12962.1|Name=mRNA_H-elongata_contig55475.12962.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=594bp
QEAIDFGDTDQDDDVDETPHAGTSGPGPPDREAGRGGSDSCSIPRPSSRA
SRAAMTSAREVVVCKATTQQQQQQQQVATRGQYIPPPKSRMEKVKAEAKE
MLGTEDQEALAAEAAAAKRSSRANRSDAKSRHRAVGGMAGGVGGMTGWTQ
AVSASSSKDRTDGRTDASKTSSTSTTGNGSSGGSTRVVNVQNRRRLERNA
REQKRSLKISQRIEELRRMLTKFGVDVKASKSSVLSEATDYIAHLQRQHA
QSEAERARLLTLLQNAKRGAACGATSISAAGGGGDEAEDSAALTPFASTN
QTGVKSTAPPAAEERTLPFSHLAGAGAGAIANGRSRVQSSSAVDDFGACG
AQPTQKSWVMEDALGTSKSSLSARQQPQSSLAVVGSEVVKPGGGVALMPT
VAVPAAVAAVPLGTPLASVVGAGTTGVLEATSRALSHVNYEKVFRTVPMP
MAIANVNGNLVDCNARLTQATGFRREEALFLSIFDLIADPFLQHTFSMIS
SILSLRGVADPPFFQVLGKRRDGSSAGVVQISIVQDDALRPLHFCICIME
NTAGTATVGAGGLAAAAPAGTLGVAPIAAGGGFGGGGGGGGGGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR000014PAS
IPR036638HLH_DNA-bd_sf
IPR035965PAS-like_dom_sf