prot_H-elongata_contig55271.12939.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55271.12939.1
Unique Nameprot_H-elongata_contig55271.12939.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length123
Homology
BLAST of mRNA_H-elongata_contig55271.12939.1 vs. uniprot
Match: Q55IK1_CRYNB (Integrase catalytic domain-containing protein n=2 Tax=Cryptococcus neoformans TaxID=5207 RepID=Q55IK1_CRYNB)

HSP 1 Score: 65.5 bits (158), Expect = 6.690e-10
Identity = 46/120 (38.33%), Postives = 62/120 (51.67%), Query Frame = 0
Query:    1 FLRKLGKKRKFTPPYTSQYNGVVERALRLLRDKTVALLLSVIDGKSDHLWAEAMAYASYMWNPCTSSSLDSGTLPYEIWYGRCSIFDNIPPFGTVGY--LRQSKPGHKLAPRRTSCIMLG 118
            +L   G + + T PY+SQ NGV ERA R + ++TVA+L       S  LWAE M    Y+ N   S S+ S   PY+I + R     ++   G   +  L + K  HKLAPR   C MLG
Sbjct:  587 YLAMRGIRHETTVPYSSQQNGVAERANRTIVERTVAILSETRLPSS--LWAEVMQTVVYLKNRSPSRSVPS--TPYQILHARPPNLAHLRVIGCAAWVLLPKHKRPHKLAPRAYLCCMLG 702          
BLAST of mRNA_H-elongata_contig55271.12939.1 vs. uniprot
Match: A0A0P1B0J9_PLAHL (Retrotransposon unclassified n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0J9_PLAHL)

HSP 1 Score: 57.8 bits (138), Expect = 1.770e-7
Identity = 35/110 (31.82%), Postives = 55/110 (50.00%), Query Frame = 0
Query:   10 KFTPPYTSQYNGVVERALRLLRDKTVALLLSVIDGKSDHLWAEAMAYASYMWNPCTSSSLDSGTLPYEIWYGRCSIFDNIPPFGTVGYLRQSKPGH-KLAPRRTSCIMLG 118
            KFTPPY SQ N VVE   R L +    ++      KS   W EA+  A+ + N C + ++++   PY++W G+  +  N+  F    +++ SK    K   R   C +LG
Sbjct:   81 KFTPPYMSQVNTVVECMNRTLVECARCMMEHASLLKSH--WGEAVTTATILRNRCPTLAVNTDMSPYQVWKGKKPVLKNLKVFSCHAFVQVSKEKRSKFDARSVRCCLLG 188          
BLAST of mRNA_H-elongata_contig55271.12939.1 vs. uniprot
Match: A0A1E3HG97_9TREE (Uncharacterized protein n=1 Tax=Cryptococcus amylolentus CBS 6039 TaxID=1295533 RepID=A0A1E3HG97_9TREE)

HSP 1 Score: 58.2 bits (139), Expect = 2.420e-7
Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = 0
Query:    1 FLRKLGKKRKFTPPYTSQYNGVVERALRLLRDKTVALLLSVIDGKSDHLWAEAMAYASYMWNPCTSSSLDSGTLPYEIWYGRCSIFDNIPPFGTVGYLR--QSKPGHKLAPRRTSCIMLG 118
            FL  LG + + T PY+SQ NG+ ERA R + ++ ++LL +        L    M+   Y+ N   S S+   T P+++ +G      ++   G VG++   + K  HKLAPR   C++LG
Sbjct: 1075 FLSGLGVRHETTVPYSSQQNGIAERANRTIVERGISLLSAA--HLPTTLRPAIMSTVVYLKNRSPSRSIS--TTPFQMLFGTPPNLSHLCVIGCVGWVHVHKKKRLHKLAPRAYRCVLLG 1190          
BLAST of mRNA_H-elongata_contig55271.12939.1 vs. uniprot
Match: UPI0019CB3DD6 (DDE-type integrase/transposase/recombinase n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI0019CB3DD6)

HSP 1 Score: 57.0 bits (136), Expect = 6.160e-7
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:    1 FLRKLGKKRKFTPPYTSQYNGVVERALRLLRDKTVALLLSVIDGKSDHLWAEAMAYASYMWNPCTSSSLDS-GTLPYEIWYGRCSIFDNIPPFGTVGYLR 99
            +L   G + + T PYTSQ NGV ERALR + D+T  LL     G S   WA A   A Y+ N   S++L +    P+E W+G      ++  +G + +++
Sbjct:  675 WLASEGIEHQLTTPYTSQSNGVAERALRTIFDRTRCLLADA--GLSQKYWAFAATTAVYLKNRSPSAALSNLRKTPFEAWHGFKPSLKHLRVWGCLAFVQ 772          
BLAST of mRNA_H-elongata_contig55271.12939.1 vs. uniprot
Match: A0A0A9ZFD9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9ZFD9_LYGHE)

HSP 1 Score: 56.2 bits (134), Expect = 9.700e-7
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 0
Query:    1 FLRKLGKKRKFTPPYTSQYNGVVERALRLLRDKTVALLLSVIDGKSDHLWAEAMAYASYMWNPCTSSSLDSGTLPYEIWYGRCSIFDNIPPFGTVGYL-RQSKPGHKLAPRRTSCIMLG 118
            F  + G   ++T PY+SQ NGV ERA   L DK V  L S  +    +LW EA+  A Y  N C +S+L+ G +P  ++YGR  + + +  FG+  ++ +  +P  KL  R     M+G
Sbjct:  227 FCSQKGINIEYTLPYSSQQNGVSERANLSLLDK-VRTLFSETE-LPRYLWGEAIQCACYQLNRCPTSALN-GNVPANLFYGRLDL-NRMKVFGSRAWIYKLPRPSDKLESRVVEGRMVG 341          
BLAST of mRNA_H-elongata_contig55271.12939.1 vs. uniprot
Match: UPI001F9DCDE0 (Uncharacterized protein n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F9DCDE0)

HSP 1 Score: 55.1 bits (131), Expect = 2.950e-6
Identity = 41/121 (33.88%), Postives = 57/121 (47.11%), Query Frame = 0
Query:    1 FLRKLGKKRKFTPPYTSQYNGVVERALRLLRDKTVALLLSVIDGKSDH-LWAEAMAYASYMWNPCTSSSLDSGTLPYEIWYGRCSIFDNIPPFGTVGYLRQSKPGH--KLAPRRTSCIMLG 118
            F  + G   + T  Y  Q NG+VER  R +      LL S      DH  WAEAM+ A Y+ N       DSG+ P+E+++G    + ++  FG V Y  Q K     KL P  T  + +G
Sbjct:  593 FCSENGINHQTTVGYAPQQNGIVERMNRTVFGTVRTLLNSA---NMDHKYWAEAMSTAIYLINIWVR---DSGSSPFELFFGHKPSYGHLHTFGCVAYHHQPKQKRTSKLDPTSTKLVFIG 707          
BLAST of mRNA_H-elongata_contig55271.12939.1 vs. uniprot
Match: A0A452XXJ4_AEGTS (Integrase catalytic domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XXJ4_AEGTS)

HSP 1 Score: 53.1 bits (126), Expect = 3.670e-6
Identity = 38/109 (34.86%), Postives = 56/109 (51.38%), Query Frame = 0
Query:   14 PYTSQYNGVVERALRLLRDKTVALLLSVIDGKSDHLWAEAMAYASYMWNPCTSSSLDSGTLPYEIWYGRCSIFDNIPPFGTVGY--LRQSKPGHKLAPRRTSCIMLGLP 120
            P+TS  NG  ERA+R + D    LL+          W EA+  ++Y+ N   S ++   T P+ + YG      +   FG + Y  L  + P HKL+PR T C++LGLP
Sbjct:   30 PHTSPQNGKAERAIRSINDIIRTLLVQA--HMPPKFWVEALHTSTYLLNVRPSRAIQHNT-PHFMLYGT-----HPSTFGCLCYPNLYATTP-HKLSPRSTPCVLLGLP 129          
BLAST of mRNA_H-elongata_contig55271.12939.1 vs. uniprot
Match: A0A1V6PPS5_9EURO (Integrase catalytic domain-containing protein n=1 Tax=Penicillium antarcticum TaxID=416450 RepID=A0A1V6PPS5_9EURO)

HSP 1 Score: 52.4 bits (124), Expect = 2.420e-5
Identity = 37/125 (29.60%), Postives = 60/125 (48.00%), Query Frame = 0
Query:    4 KLGKKRKFTPPYTSQYNGVVERALRLLRDKTVALLLSVIDGKSDHLWAEAMAYASYMWNPCTSSSLDSGTLPYEIWYGRCSIFDNIP------PFGTVGYLRQSKP----GHKLAPRRTSCIMLG 118
            K G K +FTPPYT++ NG++ER    + D  +A ++ +     + LW  A+  A Y  N   +    SG  P ++W     I +  P      P+G++ Y+   K       K+APR T   ++G
Sbjct:  519 KEGMKFEFTPPYTAEPNGIIERISGYVND--IARVMMIDAKLPEKLWPYAVETAIYTINRLANPK--SGKSPIQVWREMLGIENAKPSLTHLRPWGSIAYVHIPKSKRVQSRKMAPRATKGHLMG 639          
BLAST of mRNA_H-elongata_contig55271.12939.1 vs. uniprot
Match: A0A2Z7AWA7_9LAMI (Integrase catalytic domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AWA7_9LAMI)

HSP 1 Score: 51.2 bits (121), Expect = 6.100e-5
Identity = 40/111 (36.04%), Postives = 56/111 (50.45%), Query Frame = 0
Query:   10 KFTPPYTSQYNGVVERALRLLRDKTVALLLSVIDGKSDHLWAEAMAYASYMWNPCTSSSLDSGTLPYEIWYGRCSIFDNIPPFGTVGY--LRQSKPGHKLAPRRTSCIMLG 118
            +F+ PYTS+ NGVVER  R + D  ++LL           W +A   A Y+ N   S SL + + P+   YGR   + ++  FG + +  LR     HKLA R T C  LG
Sbjct:  573 RFSCPYTSKQNGVVERKHRHVVDTGLSLLAHA--SLPFEFWEDAFFSAVYLINRLPSPSLGAKS-PFFCLYGRRPDYSHLRVFGCLCFPCLRPYNT-HKLAFRSTPCTFLG 679          
BLAST of mRNA_H-elongata_contig55271.12939.1 vs. uniprot
Match: A0A0A9ZFM5_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9ZFM5_LYGHE)

HSP 1 Score: 48.9 bits (115), Expect = 8.270e-5
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 0
Query:    1 FLRKLGKKRKFTPPYTSQYNGVVERALRLLRDKTVALLLSVIDGKSDHLWAEAMAYASYMWNPCTSSSLDSGTLPYEIWYGRCSI 85
            F ++ G + + T PY+SQ NGV ERA   L +K   LL      K  +LW EA+  A+Y  N   +S+LD G +P E +Y +  +
Sbjct:   45 FCKQKGIQLEQTLPYSSQQNGVSERANYTLLNKVRTLLAETKLPK--YLWGEAIRSAAYQLNRSPTSALDGG-IPAEYFYNKLDL 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55271.12939.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Q55IK1_CRYNB6.690e-1038.33Integrase catalytic domain-containing protein n=2 ... [more]
A0A0P1B0J9_PLAHL1.770e-731.82Retrotransposon unclassified n=1 Tax=Plasmopara ha... [more]
A0A1E3HG97_9TREE2.420e-732.50Uncharacterized protein n=1 Tax=Cryptococcus amylo... [more]
UPI0019CB3DD66.160e-735.00DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A0A9ZFD9_LYGHE9.700e-735.29Retrovirus-related Pol polyprotein from transposon... [more]
UPI001F9DCDE02.950e-633.88Uncharacterized protein n=1 Tax=Dermatophagoides f... [more]
A0A452XXJ4_AEGTS3.670e-634.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A1V6PPS5_9EURO2.420e-529.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A2Z7AWA7_9LAMI6.100e-536.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A0A9ZFM5_LYGHE8.270e-537.65Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..95
e-value: 7.7E-11
score: 43.5
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..83
score: 10.607
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55271contigH-elongata_contig55271:2421..2789 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55271.12939.1mRNA_H-elongata_contig55271.12939.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55271 2421..2789 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55271.12939.1 ID=prot_H-elongata_contig55271.12939.1|Name=mRNA_H-elongata_contig55271.12939.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
FLRKLGKKRKFTPPYTSQYNGVVERALRLLRDKTVALLLSVIDGKSDHLW
AEAMAYASYMWNPCTSSSLDSGTLPYEIWYGRCSIFDNIPPFGTVGYLRQ
SKPGHKLAPRRTSCIMLGLPPYR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf