prot_H-elongata_contig55249.12935.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig55249.12935.1
Unique Name	prot_H-elongata_contig55249.12935.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	202

Homology

[Close]

BLAST of mRNA_H-elongata_contig55249.12935.1 vs. uniprot
Match: D8LM31_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM31_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.270e-22
Identity = 70/182 (38.46%), Postives = 90/182 (49.45%), Query Frame = 0

Query:   30 TGDVGNTKA--SPSLQRSAGDDALAPSSPLLPLLDLRLAEEDEEENITSSLRRD-GCYTGKYLRAKSI-----NTRRRSLAPVFRSHCKVESGTYRERRDGQCSVAKKGPRMD--GDVDGGEAKSRAICRLCFKMEHDTILRPCGHMLCSVCARKLRLAADISGEELFCPWDRQPVDELNPL 201
            T DVG T+A  +P+      D    P SPLLPLL LRL+EE+++E    SL    G   G               RRRSLA  F SH   +     E    + +    G   +  GD  GG   +   CRLC +   DT+++PC H  C VC  KLR  A+ SG+ L CPWDR+ VDE+ PL
Sbjct:  835 TDDVGRTRAVAAPAAATVDTDGQPTPDSPLLPLLQLRLSEEEDDERFEYSLAWGAGAEAGXXXXXXXXXQAGGKARRRSLAKAFSSHKTRKEPKAHEGVGARPAAQAAGNESEARGDGVGGGKTTTLTCRLCCRNACDTVMKPCQHSACGVCVDKLRGQAEQSGQALSCPWDRRGVDEIRPL 1016

[Close]

BLAST of mRNA_H-elongata_contig55249.12935.1 vs. uniprot
Match: A0A6H5KMM5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.520e-22
Identity = 68/184 (36.96%), Postives = 89/184 (48.37%), Query Frame = 0

Query:   30 TGDVGNTKA--SPSLQRSAGDDALAPSSPLLPLLDLRLAEEDEEENITSSLRRDGC--------YTGKYLRAKSINTRRRSLAPVFRSHCKVESGTYRERRDGQCSVAKKGPRMD--GDVDGGEAKSRAICRLCFKMEHDTILRPCGHMLCSVCARKLRLAADISGEELFCPWDRQPVDELNPL 201
            TGDV  T+A  +P+      D    P SPLLPLL LRL+EE+++E    SL   G               +A+    RRRSLA  F SH   +     E    + +    G   +  GD  GG   +R  C        DT+++PC H  CSVC  KLR   + SG+ L CPWDR+ VDE+ PL
Sbjct: 1171 TGDVDRTRAVAAPAAATVEHDGQPTPDSPLLPLLQLRLSEEEDDERFEYSLAWGGAGAXXXXXXXXXXXXKARGGKPRRRSLAKAFSSHKTRKEPKVHEGAGARSAAQVAGIESEARGDGVGGGKTTRLTCXXXXXNACDTVMKPCQHSACSVCVDKLRSQGEQSGQALSCPWDRRGVDEICPL 1354

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig55249.12935.1 vs. uniprot

BLAST of mRNA_H-elongata_contig55249.12935.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LM31_ECTSI	1.270e-22	38.46	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KMM5_9PHAE	4.520e-22	36.96	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 118..199 e-value: 7.6E-10 score: 40.1
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 146..197 e-value: 2.2E-9 score: 37.0
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 143..197
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 163..172
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 148..192 score: 10.394

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig55249	contig	H-elongata_contig55249:3102..3707 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig55249.12935.1	mRNA_H-elongata_contig55249.12935.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig55249 2975..3860 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig55249.12935.1 ID=prot_H-elongata_contig55249.12935.1|Name=mRNA_H-elongata_contig55249.12935.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
MGNERDTADTAVSGPPQYGKDKLQAWETSTGDVGNTKASPSLQRSAGDDA
LAPSSPLLPLLDLRLAEEDEEENITSSLRRDGCYTGKYLRAKSINTRRRS
LAPVFRSHCKVESGTYRERRDGQCSVAKKGPRMDGDVDGGEAKSRAICRL
CFKMEHDTILRPCGHMLCSVCARKLRLAADISGEELFCPWDRQPVDELNP
L*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR001841	Znf_RING