prot_H-elongata_contig55246.12933.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55246.12933.1
Unique Nameprot_H-elongata_contig55246.12933.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length460
Homology
BLAST of mRNA_H-elongata_contig55246.12933.1 vs. uniprot
Match: A0A6H5L608_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L608_9PHAE)

HSP 1 Score: 423 bits (1088), Expect = 2.110e-139
Identity = 265/471 (56.26%), Postives = 319/471 (67.73%), Query Frame = 0
Query:    1 QAVIVGFILSVKLSLNALDPVGRGKMASYEVTEEDVQALLRSLDDTSSTGDVLECLAASPRLCSEDRCTLAEEMESTTAPIRECLLNLRDAAELLVAPQSSATRASLASTGKSSXXXXXXXXXXXXXXXXXXD-------VDGVRASESTSAP----EVDGEFFSRGRKGEGNRRETRLRPERSRVVTHNLIVLLSALHREDTHQGVVGCEEDTRADDIVASNTPSKSKQEAGEKESYSSEAMKGQDDLAHLSIASSQRLLSREEEVVFGLAEPLLDACLSVAAKRASPLLFGTVVEAKAMLRRRLWSSKDPAALEKQRVEANDVLDAAVPNIKVKDVVIGTWGESQIAMGDMVTATVTIVREHASEYRGIRRRRPEGGFL-ERGEPWWVILAAGRGGETLINASPMLVEYLGKEEAECKIKFQAPRRPGVVTLAVYVKSPVFVGVDCESSSSFKVYRHDELRKDEDAGDW 459
             AV++GF+L  K++L+ LDP G GK   +EVT+EDV+ALL +LDDTSST DVLECLAA P+LCS +R  LA EME+ T P+R+ LL     A  L  P SS+            XXXXXXXXXXXXXXXXXX          G   S + +A     EVDGEFF++GR+GEGNRR  R  PE SRVV HNL+V+LSALHR                                           KG   LA +S       L+RE+++VFGLAEPLLDAC+ VAA+RASP L GTVVE KAMLRRRLWSS+DPAALE+QR E +  LDAAVP+IKVK V + TWGESQ+A+GD VTAT+TI REHA EY+G+RRRRPE G L  +GEPWWV+LA G+GG +LI  +PMLVE LG   AECK+KFQAP RPG V L V+VKSPVFVGVDCES++ F+V+RHDEL++D+DAGDW
Sbjct:  183 MAVLLGFVLGAKVTLDLLDPAGGGKQPDFEVTDEDVKALLSNLDDTSSTADVLECLAACPQLCSAERRVLAGEMEAITDPVRDWLLEREGGAPPLRGPLSSSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGESPASGEEQSPAAAAAGTKGEVDGEFFTQGRRGEGNRRTARESPELSRVVAHNLVVMLSALHRAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXKGSRLLAAVSAGGR---LAREQDLVFGLAEPLLDACMQVAARRASPQLLGTVVETKAMLRRRLWSSEDPAALERQREEVDLDLDAAVPSIKVKSVAVETWGESQVAVGDTVTATITIAREHAPEYQGLRRRRPEAGSLIAKGEPWWVMLAGGKGGSSLIRVTPMLVENLGSGIAECKMKFQAPARPGFVDLTVFVKSPVFVGVDCESTTRFRVWRHDELKEDDDAGDW 648          
BLAST of mRNA_H-elongata_contig55246.12933.1 vs. uniprot
Match: A0A835Z0Q2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.740e-30
Identity = 68/135 (50.37%), Postives = 91/135 (67.41%), Query Frame = 0
Query:  329 IGTWGESQIAMGDMVTATVTIVREHASEYRGIRRRRP-EGGFLERGEPWWVILA-AGRGGE-TLINASPMLVEYLGKEEAECKIKFQAPRRPGVVTLAVYVKSPVFVGVDCESSSSFKVYRHDELRKDEDA-GDW 459
            + TWGE QIA+GD VTA VT+ R HA  YRG +  +P EG  + +GEPWWV+LA  G  G+  L+ A+P LV+ LGKE+   ++KF+AP  PG V   V V+SPVF+GVD E + SF V   D++R D+D  GD+
Sbjct:    3 VETWGEDQIAVGDTVTAHVTLQRAHAGLYRGFKGLKPIEGTPVFKGEPWWVLLARVGPAGQRVLMGATPTLVDDLGKEQVTAEVKFKAPGVPGKVDYIVLVRSPVFIGVDVEQAGSFDVVGFDQIRDDDDXXGDY 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55246.12933.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L608_9PHAE2.110e-13956.26J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A835Z0Q2_9STRA1.740e-3050.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004179Sec63 domainPFAMPF02889Sec63coord: 248..438
e-value: 2.3E-8
score: 33.5
IPR035892C2 domain superfamilyGENE3D2.60.40.150coord: 320..455
e-value: 1.9E-7
score: 32.8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.455
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 336..445

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55246contigH-elongata_contig55246:33..3000 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55246.12933.1mRNA_H-elongata_contig55246.12933.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55246 33..3000 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55246.12933.1 ID=prot_H-elongata_contig55246.12933.1|Name=mRNA_H-elongata_contig55246.12933.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=460bp
QAVIVGFILSVKLSLNALDPVGRGKMASYEVTEEDVQALLRSLDDTSSTG
DVLECLAASPRLCSEDRCTLAEEMESTTAPIRECLLNLRDAAELLVAPQS
SATRASLASTGKSSRKGKGSKKAKGGSGGAGGDVDGVRASESTSAPEVDG
EFFSRGRKGEGNRRETRLRPERSRVVTHNLIVLLSALHREDTHQGVVGCE
EDTRADDIVASNTPSKSKQEAGEKESYSSEAMKGQDDLAHLSIASSQRLL
SREEEVVFGLAEPLLDACLSVAAKRASPLLFGTVVEAKAMLRRRLWSSKD
PAALEKQRVEANDVLDAAVPNIKVKDVVIGTWGESQIAMGDMVTATVTIV
REHASEYRGIRRRRPEGGFLERGEPWWVILAAGRGGETLINASPMLVEYL
GKEEAECKIKFQAPRRPGVVTLAVYVKSPVFVGVDCESSSSFKVYRHDEL
RKDEDAGDW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004179Sec63-dom
IPR035892C2_domain_sf
IPR014756Ig_E-set