prot_H-elongata_contig55085.12911.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55085.12911.1
Unique Nameprot_H-elongata_contig55085.12911.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length114
Homology
BLAST of mRNA_H-elongata_contig55085.12911.1 vs. uniprot
Match: A0A6H5K212_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K212_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.840e-35
Identity = 74/125 (59.20%), Postives = 89/125 (71.20%), Query Frame = 0
Query:    1 WNTFFWSRRRDWEQAFASLFHGLLA---GRGDGSCSDRSGDW--------RDREGFYLQCPRFTVLWRLVHDRGTSGSGDGGSGRLIPGAAMTQSTRRLRKRLKATGIEFRMPLDPAGDQRDAKA 114
            W +FFWSRRRDWEQAF SL++GL++   G G+G+                R+ EGFYLQCP +TV WRLV +RG  G+ D G+ RL+P A MT+STRRLRKRL A GIEF MPLDPAGDQRDA+A
Sbjct:  703 WTSFFWSRRRDWEQAFGSLYYGLISRNRGGGEGARGXXXXXXXXXAAEGEREGEGFYLQCPLYTVAWRLVRERG--GAEDEGT-RLVPAAVMTRSTRRLRKRLTAAGIEFGMPLDPAGDQRDAQA 824          
BLAST of mRNA_H-elongata_contig55085.12911.1 vs. uniprot
Match: D7FXK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK2_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.860e-32
Identity = 71/128 (55.47%), Postives = 86/128 (67.19%), Query Frame = 0
Query:    1 WNTFFWSRRRDWEQAFASLFHGLLA---GRGDGSCSDRSGDWRDREG---------FYLQCPRFTVLWRLVHDRGTSGSGDGGSGR--LIPGAAMTQSTRRLRKRLKATGIEFRMPLDPAGDQRDAKA 114
            W +FFWSRRRDWEQAF SL++GL++   G G+G+   R                  FYLQCP +TV+W LV +RG  G+ D G+ R  L+P A MT+STRRLRKRL A GIEF MPLDPAGDQRDA+A
Sbjct:  397 WTSFFWSRRRDWEQAFGSLYYGLISRNRGGGEGARGGRXXXXXXXXXXXXXXXXXXFYLQCPLYTVVWTLVRERG--GAEDDGTRRRRLVPAALMTRSTRRLRKRLTAAGIEFGMPLDPAGDQRDAQA 522          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55085.12911.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K212_9PHAE2.840e-3559.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXK2_ECTSI3.860e-3255.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55085contigH-elongata_contig55085:3203..3859 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55085.12911.1mRNA_H-elongata_contig55085.12911.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55085 3202..3859 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55085.12911.1 ID=prot_H-elongata_contig55085.12911.1|Name=mRNA_H-elongata_contig55085.12911.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
WNTFFWSRRRDWEQAFASLFHGLLAGRGDGSCSDRSGDWRDREGFYLQCP
RFTVLWRLVHDRGTSGSGDGGSGRLIPGAAMTQSTRRLRKRLKATGIEFR
MPLDPAGDQRDAKA
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