prot_H-elongata_contig55070.12908.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55070.12908.1
Unique Nameprot_H-elongata_contig55070.12908.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length44
Homology
BLAST of mRNA_H-elongata_contig55070.12908.1 vs. uniprot
Match: D7FJ92_ECTSI (ER membrane protein complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ92_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.420e-13
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 0
Query:    1 MVAIAYPDMRDGVPTPAHALGDDSLLIKYINPRLLAFAMLSKEE 44
            +VA AYPD RDGV TPAH LGDDSLLIKYINPRL AFA L  EE
Sbjct:  753 VVATAYPDGRDGVQTPAHTLGDDSLLIKYINPRLFAFATLCPEE 796          
BLAST of mRNA_H-elongata_contig55070.12908.1 vs. uniprot
Match: A0A835YVX9_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.710e-7
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 0
Query:    1 MVAIAYPDMRDGVPTPAHALGDDSLLIKYINPRLLAFAMLSKEE 44
            +VA AYP  R+ + +PA  LGDDSLL+KY+NP L A A + K++
Sbjct:  724 VVATAYPLRREAIQSPAQVLGDDSLLLKYLNPHLAAVATMPKQQ 767          
BLAST of mRNA_H-elongata_contig55070.12908.1 vs. uniprot
Match: B5Y4Q1_PHATC (ER membrane protein complex subunit 1 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y4Q1_PHATC)

HSP 1 Score: 49.3 bits (116), Expect = 1.460e-5
Identity = 19/44 (43.18%), Postives = 33/44 (75.00%), Query Frame = 0
Query:    1 MVAIAYPDMRDGVPTPAHALGDDSLLIKYINPRLLAFAMLSKEE 44
            ++++AYP   + + +P++ALGD SLL+KY+NP L+A    +KE+
Sbjct:  540 ILSVAYPSREEAIQSPSNALGDFSLLLKYVNPHLMAVVTKTKED 583          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55070.12908.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJ92_ECTSI1.420e-1379.55ER membrane protein complex subunit 1 n=2 Tax=Ecto... [more]
A0A835YVX9_9STRA8.710e-752.27ER membrane protein complex subunit 1 n=1 Tax=Trib... [more]
B5Y4Q1_PHATC1.460e-543.18ER membrane protein complex subunit 1 n=1 Tax=Phae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55070contigH-elongata_contig55070:3554..3685 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55070.12908.1mRNA_H-elongata_contig55070.12908.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55070 3542..3685 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55070.12908.1 ID=prot_H-elongata_contig55070.12908.1|Name=mRNA_H-elongata_contig55070.12908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MVAIAYPDMRDGVPTPAHALGDDSLLIKYINPRLLAFAMLSKEE
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