prot_H-elongata_contig55019.12906.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig55019.12906.1
Unique Name	prot_H-elongata_contig55019.12906.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	92

Homology

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BLAST of mRNA_H-elongata_contig55019.12906.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.370e-11
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 0

Query:    1 AISTIGSGGLDWTTQRIGQVTFTSGVFVLIFEIVTVPCITAKLGIKWSQRLGTLFETPAYVSIPMLAWFMGTGL 74
            A+ST+ SGGLDWTT++IGQV    GV +L F++V  P ++ ++G+  SQR       P Y   P L+   G+G+
Sbjct:  492 ALSTVASGGLDWTTKQIGQVLSLVGVGMLAFQLVVYPWLSKRIGVTRSQRWACFLAIPVYAFFPFLSRLRGSGV 565

[Close]

BLAST of mRNA_H-elongata_contig55019.12906.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.280e-10
Identity = 31/93 (33.33%), Postives = 54/93 (58.06%), Query Frame = 0

Query:    1 AISTIGSGGLDWTTQRIGQVTFTSGVFVLIFEIVTVPCITAKLGIKWSQRLGTLFETPAYVSIPMLAWFMGTGLEDFACA-ILIFTICACSNS 92
            A+ST+ SGGLDW++++IGQ     G+F+L F+++  P ++ ++G   SQR       P ++  P L+   GT     A + +L+F   A +N+
Sbjct:  449 ALSTVASGGLDWSSKQIGQALSVCGIFMLFFQLLVYPRLSKRIGATRSQRWACFLSIPVFLVFPTLSHLRGTERTLVAASLVLLFLTNAVANT 541

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig55019.12906.1 vs. uniprot

BLAST of mRNA_H-elongata_contig55019.12906.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LRH7_ECTSI	2.370e-11	41.89	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LRH9_ECTSI	7.280e-10	33.33	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 90..92
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 65..89
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 46..64
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..45
None	No IPR available	TMHMM	TMhelix		coord: 65..87
None	No IPR available	TMHMM	TMhelix		coord: 23..45

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig55019	contig	H-elongata_contig55019:978..1404 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig55019.12906.1	mRNA_H-elongata_contig55019.12906.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig55019 978..1404 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig55019.12906.1 ID=prot_H-elongata_contig55019.12906.1|Name=mRNA_H-elongata_contig55019.12906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
AISTIGSGGLDWTTQRIGQVTFTSGVFVLIFEIVTVPCITAKLGIKWSQR
LGTLFETPAYVSIPMLAWFMGTGLEDFACAILIFTICACSNS