prot_H-elongata_contig54945.12894.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54945.12894.1
Unique Nameprot_H-elongata_contig54945.12894.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length150
Homology
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: D7FJV0_ECTSI (Ribosome production factor 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJV0_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 8.790e-45
Identity = 98/149 (65.77%), Postives = 111/149 (74.50%), Query Frame = 0
Query:    3 QVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALRTVSKRQRDDSDVDGVEDGAADPGGDDIRNGDASTAGGATTDEGMEEGG--ATAAARAKRNTRRKNKERKIL 149
            ++P V L EMGP+LDL IRRTSFAA DLWKASVKKPRVAETRK KNVSAN+ GDK+GRIHLGRQDLSSMKVRRVKALRTV K  ++     G  +GA D GG D  +G  ++  G+T           ATAAARAKR TRRKNKERK+L
Sbjct:  208 KIPSVDLKEMGPSLDLQIRRTSFAAKDLWKASVKKPRVAETRKTKNVSANQFGDKLGRIHLGRQDLSSMKVRRVKALRTVGKGAKE-----GEGEGAEDGGGGDPMDGITTSGTGSTXXXXXXXXXXXATAAARAKRGTRRKNKERKVL 351          
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A7S2UZD7_9STRA (Ribosome production factor 2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.200e-23
Identity = 47/78 (60.26%), Postives = 64/78 (82.05%), Query Frame = 0
Query:    3 QVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALR 80
            ++P+V L   GP+LDLV+RR+   + DLW+A+ K+P+    +KVKNV+ NE+GDK+GRIHLGRQDLSSMKV++VKALR
Sbjct:  211 KIPRVQLESTGPSLDLVLRRSKLPSPDLWRAACKQPKQLRPKKVKNVTKNEMGDKVGRIHLGRQDLSSMKVKKVKALR 288          
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A835ZC15_9STRA (Ribosome production factor 2 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC15_9STRA)

HSP 1 Score: 100 bits (250), Expect = 7.630e-23
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 0
Query:    3 QVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALRTVSKRQRDDSDVDGVEDGAA 100
            +VP + L  MGP  DLV+RR  FAATDLWK + +KP+  + +KVKNV++N   + +GRIHLGRQDLSSM VRRVKALR+  KR+R +   +G  +GAA
Sbjct:  209 KVPHIQLERMGPHADLVLRRVKFAATDLWKVATRKPKQLKPKKVKNVTSNTF-ETVGRIHLGRQDLSSMNVRRVKALRSGGKRKRGE---EGAGEGAA 302          
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A367JKW8_RHIST (Ribosome production factor 2 homolog n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367JKW8_RHIST)

HSP 1 Score: 91.7 bits (226), Expect = 2.160e-19
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 0
Query:    3 QVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALR---------TVSKRQRDDSD 91
            + P+V L EMGP+ DL IRRT+    DLWKA+ K P+  + +KVKN+  +E+GDK GRIHLG+QDLS ++ R++K L+         T+SK+Q+ D +
Sbjct:  206 KTPRVELEEMGPSYDLKIRRTTLPKPDLWKAACKVPKEVKPKKVKNIEVDEMGDKYGRIHLGKQDLSKIQTRKMKGLKKRSADDDEETLSKKQKVDQE 303          
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A7S1CB60_9STRA (Ribosome production factor 2 homolog (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CB60_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.500e-19
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 0
Query:    6 KVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALRTVSKRQRDDSDVDG 94
            K +LS+MGP  DLV RRT  A+ DL+KA++K PR A+  KVKNV+ N LGDK+GRIH+  QDL +M+V+R+KALR+   R+R  S  DG
Sbjct:  212 KATLSDMGPHFDLVCRRTQEASADLFKAAMKMPREAKAHKVKNVTRNALGDKIGRIHMKTQDLDNMQVKRIKALRS---RKRASSAGDG 297          
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A8K1FC18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC18_PYTOL)

HSP 1 Score: 90.1 bits (222), Expect = 1.260e-18
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 0
Query:    5 PKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANEL-GDKMGRIHLGRQDLSSMKVRRVKALRTV-SKRQRDDSDVDGVED 97
            P+V L EMGP  DL  RR   A+ DL KA+ KKP+    +K+KN+S +EL GDK+GRIHLG+QD+ SM+ RRVKALR   S+ + D +DVD  +D
Sbjct:  243 PRVELEEMGPRFDLHFRRQKLASADLMKAATKKPKGLAPKKIKNISRDELTGDKLGRIHLGKQDIYSMQSRRVKALRKAPSELKNDAADVDMEDD 337          
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A0L0HLF0_SPIPD (Ribosome production factor 2 homolog n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HLF0_SPIPD)

HSP 1 Score: 89.4 bits (220), Expect = 1.650e-18
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 0
Query:    3 QVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALR 80
            ++P+V L EMGPA DLVIRR   A TDLWKA+ + P+  + +K KN+  NELGDKMGRIH+ +QDL  ++ R++K L+
Sbjct:  207 RLPRVELEEMGPACDLVIRRCRTADTDLWKAATRVPKELKPQKEKNIERNELGDKMGRIHMHKQDLGKLQTRKMKGLK 284          
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A1V9ZW29_9STRA (Ribosome production factor 2 homolog n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZW29_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.120e-18
Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 0
Query:    5 PKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANEL-GDKMGRIHLGRQDLSSMKVRRVKALR-TVSKRQRDDSDVD 93
            P+V L EMGP  DL  RR  FA+ DL KA++KKP+    +K+KNV+ +EL GDK+GRIH+ RQD+ SM VRRVKALR T ++ + DD +++
Sbjct:  236 PRVELDEMGPRFDLSFRRHKFASADLMKAALKKPKELAPKKIKNVTRDELTGDKIGRIHVDRQDIYSMNVRRVKALRKTPAQLKTDDEEME 326          
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A507EKT6_9FUNG (Ribosome production factor 2 homolog n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507EKT6_9FUNG)

HSP 1 Score: 90.9 bits (224), Expect = 2.130e-18
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 0
Query:    3 QVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVSANELGDKMGRIHLGRQDLSSMKVRRVKALR 80
            ++P+V L EMGPA DLVIRR   A TDLWKAS + P+  + +K KNV  NELGDKMGRIH+ +QDL  ++ R++K L+
Sbjct:  845 RLPRVELEEMGPACDLVIRRCRTADTDLWKASTRVPKELKPQKEKNVERNELGDKMGRIHMHKQDLGKLQTRKMKGLK 922          
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Match: A0A7S1T9P2_9RHOD (Ribosome production factor 2 homolog n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T9P2_9RHOD)

HSP 1 Score: 86.3 bits (212), Expect = 2.310e-18
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 0
Query:    4 VPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPR-VAETRKVKNVSANE-LGDKMGRIHLGRQDLSSMKVRRVKALR 80
            +P+V LSE GP+ DLV+RRT FA+ DLWKA+ +KPR  A  RK KNV+ +  LGD  GRIH+G+QDL+ + +RR++ALR
Sbjct:   60 LPRVELSECGPSFDLVLRRTQFASEDLWKAATRKPRDPAVPRKTKNVTWDSPLGDTQGRIHVGKQDLTVLALRRIRALR 138          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54945.12894.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJV0_ECTSI8.790e-4565.77Ribosome production factor 2 homolog n=2 Tax=Ectoc... [more]
A0A7S2UZD7_9STRA5.200e-2360.26Ribosome production factor 2 homolog n=1 Tax=Fibro... [more]
A0A835ZC15_9STRA7.630e-2356.12Ribosome production factor 2 homolog n=1 Tax=Tribo... [more]
A0A367JKW8_RHIST2.160e-1946.94Ribosome production factor 2 homolog n=1 Tax=Rhizo... [more]
A0A7S1CB60_9STRA7.500e-1956.18Ribosome production factor 2 homolog (Fragment) n=... [more]
A0A8K1FC18_PYTOL1.260e-1853.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0L0HLF0_SPIPD1.650e-1853.85Ribosome production factor 2 homolog n=1 Tax=Spize... [more]
A0A1V9ZW29_9STRA2.120e-1853.85Ribosome production factor 2 homolog n=1 Tax=Thrau... [more]
A0A507EKT6_9FUNG2.130e-1856.41Ribosome production factor 2 homolog n=1 Tax=Spize... [more]
A0A7S1T9P2_9RHOD2.310e-1856.96Ribosome production factor 2 homolog n=1 Tax=Comps... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039770Ribosome biogenesis protein Rpf2PANTHERPTHR12728BRIX DOMAIN CONTAINING PROTEINcoord: 3..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54945contigH-elongata_contig54945:1925..3066 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54945.12894.1mRNA_H-elongata_contig54945.12894.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54945 1475..3777 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54945.12894.1 ID=prot_H-elongata_contig54945.12894.1|Name=mRNA_H-elongata_contig54945.12894.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MWQVPKVSLSEMGPALDLVIRRTSFAATDLWKASVKKPRVAETRKVKNVS
ANELGDKMGRIHLGRQDLSSMKVRRVKALRTVSKRQRDDSDVDGVEDGAA
DPGGDDIRNGDASTAGGATTDEGMEEGGATAAARAKRNTRRKNKERKIL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039770Rpf2