prot_H-elongata_contig54943.12893.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54943.12893.1
Unique Nameprot_H-elongata_contig54943.12893.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length82
Homology
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BLAST of mRNA_H-elongata_contig54943.12893.1 vs. uniprot
Match: A0A6H5LQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ53_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.760e-18
Identity = 56/86 (65.12%), Postives = 62/86 (72.09%), Query Frame = 0 
Query:    1 MNWMTSGRKRVQRSQKIKELRAKHFARVAADGARA-LPKPIR--SFTSRQSADVSRLTTRWIQACHQGQPSSGRNRTCA-SSAAEH 82
            MNWMTSGRKRVQRSQK+KELRAKHFA+VAAD ARA + +P R  S T  QSADVSRL +RWIQ            RT A S+AAEH
Sbjct:    1 MNWMTSGRKRVQRSQKVKELRAKHFAKVAADRARAPVSRPARASSSTLNQSADVSRLKSRWIQPLPSTHKVPALQRTVAGSAAAEH 86
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BLAST of mRNA_H-elongata_contig54943.12893.1 vs. uniprot
Match: A0A836C816_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C816_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 9.910e-5
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 0 
Query:    1 MNWMTSGRKRVQRSQKIKELRAKHFARVAADGARALPKPIRSFTSRQ---------SADVSRLTTRW 58
            MNWMTSG+KR+ R+QK +E R++HF+  ++  A+ L +   +  SR          SADV RL  RW
Sbjct:   48 MNWMTSGKKRITRTQKAREQRSQHFSSSSSQRAKLLGRGSDASASRPIKKPPTLHGSADVMRLKCRW 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54943.12893.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LQ53_9PHAE2.760e-1865.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C816_9STRA9.910e-541.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54943contigH-elongata_contig54943:2028..3222 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54943.12893.1mRNA_H-elongata_contig54943.12893.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54943 2028..3222 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54943.12893.1 ID=prot_H-elongata_contig54943.12893.1|Name=mRNA_H-elongata_contig54943.12893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MNWMTSGRKRVQRSQKIKELRAKHFARVAADGARALPKPIRSFTSRQSAD
VSRLTTRWIQACHQGQPSSGRNRTCASSAAEH
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