prot_H-elongata_contig54900.12886.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54900.12886.1
Unique Nameprot_H-elongata_contig54900.12886.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length168
Homology
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BLAST of mRNA_H-elongata_contig54900.12886.1 vs. uniprot
Match: UPI001035699E (uncharacterized protein LOC114268089 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001035699E)

HSP 1 Score: 58.2 bits (139), Expect = 3.330e-7
Identity = 44/164 (26.83%), Postives = 67/164 (40.85%), Query Frame = 0 
Query:   12 CMDCCHLKGIWNGILCLLTVKDADNKLVIVCMVVSVVENADVYDYTLLHAKKTPDMAGFVNHETTTYFVDGHKGSATGLPRRVPLSEGRRCLRHIVGNITPD----DCNKLIFEAAREPNEMLFNECMDKVKVLKPASYDKIMALPRSSWANYAW----RSNHI 167
            C+D CHLKG + G+L  +   D DN L ++   V   E    + + L H +   D       +  T   DG KG    L    P +  RRC RH+  N              +  AR   E  +N  M +++ +   +Y  +  L    WA + +    +SNHI
Sbjct:   48 CVDGCHLKGSYGGVLLAVVALDRDNGLFLLAYAVVECECKKNWRFFLYHLRTIIDNGP--QSKPRTIMSDGQKGIEPALKEVTPEATHRRCCRHLFNNFKSKFPGLKLRGSFWAVARAYTEKDYNIVMRQIEEMPKPAYKWLNDLKLEVWARHTFDPRVKSNHI 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54900.12886.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001035699E3.330e-726.83uncharacterized protein LOC114268089 n=1 Tax=Camel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54900contigH-elongata_contig54900:2914..3834 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54900.12886.1mRNA_H-elongata_contig54900.12886.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54900 2914..3834 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54900.12886.1 ID=prot_H-elongata_contig54900.12886.1|Name=mRNA_H-elongata_contig54900.12886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
CYRGFLSTQVFCMDCCHLKGIWNGILCLLTVKDADNKLVIVCMVVSVVEN
ADVYDYTLLHAKKTPDMAGFVNHETTTYFVDGHKGSATGLPRRVPLSEGR
RCLRHIVGNITPDDCNKLIFEAAREPNEMLFNECMDKVKVLKPASYDKIM
ALPRSSWANYAWRSNHI*
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