prot_H-elongata_contig5486.12881.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5486.12881.1
Unique Nameprot_H-elongata_contig5486.12881.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length171
Homology
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BLAST of mRNA_H-elongata_contig5486.12881.1 vs. uniprot
Match: D7FHY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY2_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 4.700e-28
Identity = 96/175 (54.86%), Postives = 106/175 (60.57%), Query Frame = 0 
Query:   11 FRGDAYFKDHGCTEGAAVQNGGRMRFYGKARFTDNRNYYSWGGGVVN-------DGGTLVFRAAVKFTNNQAEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAFSVTVGAEYDSDPTPGSLTFEKPSVVRYIGNEA--------PVNACTLAYVE-NGTTLVGFDVDDVCLENT 169
            FR DA F DH C EGAAV N G+MRFYGKA F+DNRNY   GGGV+N         G LVF+AAV+F  N AE         XXXXXXXXXXXXXXXXXXXX    VT           GS+TFEKP VVR   N          P+  C+LAYVE N TT+VGFD DD+C E T
Sbjct:  230 FRDDAVFSDHDCDEGAAVSNTGKMRFYGKAYFSDNRNYRDTGGGVLNRAVYDSDQAGDLVFKAAVQFNRNTAEYGGGIAVTGXXXXXXXXXXXXXXXXXXXXXXXXVTGD---------GSVTFEKPEVVRISDNTLLANEYNPDPITGCSLAYVEGNETTVVGFDFDDICQEVT 395
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5486.12881.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHY2_ECTSI4.700e-2854.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5486contigH-elongata_contig5486:1265..3114 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5486.12881.1mRNA_H-elongata_contig5486.12881.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5486 79..5120 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5486.12881.1 ID=prot_H-elongata_contig5486.12881.1|Name=mRNA_H-elongata_contig5486.12881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
MHPMRNVLSSFRGDAYFKDHGCTEGAAVQNGGRMRFYGKARFTDNRNYYS
WGGGVVNDGGTLVFRAAVKFTNNQAEIGGGIAVTGGEVTFKKAVKFDSNI
ADENGGAFSVTVGAEYDSDPTPGSLTFEKPSVVRYIGNEAPVNACTLAYV
ENGTTLVGFDVDDVCLENTE*
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