prot_H-elongata_contig54757.12869.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54757.12869.1
Unique Nameprot_H-elongata_contig54757.12869.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length118
Homology
BLAST of mRNA_H-elongata_contig54757.12869.1 vs. uniprot
Match: D7G8U2_ECTSI (1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8U2_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.260e-70
Identity = 113/118 (95.76%), Postives = 117/118 (99.15%), Query Frame = 0
Query:    1 MGYPPAMAASDKYHGVAKFNVATGKQQKGTSANPSLTSVFAHTLIDIATEDRSVVGITAAMPGGTGMDLFGRRFPKRTYDVGIAEQHAVTFAAGMAVEGLKPFCCIYSTFLQRAYDQV 118
            MGYPPAMAASDKYHGVAKFNVATGKQ KGTSANPSLTSVFA+TLIDIATEDRSVVGITAAMPGGTGMD+FGRRFPKRTYDVGIAEQHAVTFAAGMAVEGLKPFCC+YSTF+QRAYDQV
Sbjct:  382 MGYPPAMAASDKYHGVAKFNVATGKQHKGTSANPSLTSVFANTLIDIATEDRSVVGITAAMPGGTGMDMFGRRFPKRTYDVGIAEQHAVTFAAGMAVEGLKPFCCVYSTFMQRAYDQV 499          
BLAST of mRNA_H-elongata_contig54757.12869.1 vs. uniprot
Match: A0A835ZBE2_9STRA (1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBE2_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.570e-65
Identity = 104/119 (87.39%), Postives = 115/119 (96.64%), Query Frame = 0
Query:    1 MGYPPAMAASDKYHGVAKFNVATGKQQKGTSA-NPSLTSVFAHTLIDIATEDRSVVGITAAMPGGTGMDLFGRRFPKRTYDVGIAEQHAVTFAAGMAVEGLKPFCCIYSTFLQRAYDQV 118
            MGYPPAMAASDKYHGV+KF+VATG+QQKG  A  PSLT++FA+TLIDIA+EDR+VVGITAAMPGGTGMD+FGRRFPKRTYDVGIAEQHAVTFAAGMA+EGLKPFCCIYSTF+QRAYDQV
Sbjct:  161 MGYPPAMAASDKYHGVSKFDVATGRQQKGPPAIAPSLTTIFANTLIDIASEDRTVVGITAAMPGGTGMDIFGRRFPKRTYDVGIAEQHAVTFAAGMAIEGLKPFCCIYSTFMQRAYDQV 279          
BLAST of mRNA_H-elongata_contig54757.12869.1 vs. uniprot
Match: A0A7S2PQQ1_9STRA (1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PQQ1_9STRA)

HSP 1 Score: 204 bits (519), Expect = 4.820e-61
Identity = 96/117 (82.05%), Postives = 108/117 (92.31%), Query Frame = 0
Query:    2 GYPPAMAASDKYHGVAKFNVATGKQQKGTSANPSLTSVFAHTLIDIATEDRSVVGITAAMPGGTGMDLFGRRFPKRTYDVGIAEQHAVTFAAGMAVEGLKPFCCIYSTFLQRAYDQV 118
            GYPPA+AASD+ HGV KF++ATG QQKG +A PS TS+FA++LID ATEDR+VVGITAAMPGGTGMD+FGRRFPKRT+DVGIAEQHAVTFAAGMA EGLKPFCCIYSTF+QR YDQV
Sbjct:  145 GYPPALAASDRMHGVGKFDIATGIQQKGKAAAPSFTSIFANSLIDAATEDRAVVGITAAMPGGTGMDIFGRRFPKRTFDVGIAEQHAVTFAAGMACEGLKPFCCIYSTFMQRGYDQV 261          
BLAST of mRNA_H-elongata_contig54757.12869.1 vs. uniprot
Match: B5YMM4_THAPS (1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMM4_THAPS)

HSP 1 Score: 205 bits (522), Expect = 4.360e-60
Identity = 96/117 (82.05%), Postives = 108/117 (92.31%), Query Frame = 0
Query:    2 GYPPAMAASDKYHGVAKFNVATGKQQKGTSANPSLTSVFAHTLIDIATEDRSVVGITAAMPGGTGMDLFGRRFPKRTYDVGIAEQHAVTFAAGMAVEGLKPFCCIYSTFLQRAYDQV 118
            GYPPA+AASDK HGV KF++ATG Q KG +A+PSLTS+FA+ +ID ATEDR++VGITAAMPGGTGMD+FGRRFPKRTYDVGIAEQHAVTFAAGMA EGLKPFCCIYSTF+QR YDQV
Sbjct:  346 GYPPALAASDKMHGVGKFDIATGIQVKGKAASPSLTSIFANAMIDAATEDRAIVGITAAMPGGTGMDIFGRRFPKRTYDVGIAEQHAVTFAAGMACEGLKPFCCIYSTFMQRGYDQV 462          
BLAST of mRNA_H-elongata_contig54757.12869.1 vs. uniprot
Match: A0A6U3VSH6_9STRA (1-deoxy-D-xylulose-5-phosphate synthase n=7 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6U3VSH6_9STRA)

HSP 1 Score: 204 bits (520), Expect = 7.480e-60
Identity = 100/117 (85.47%), Postives = 106/117 (90.60%), Query Frame = 0
Query:    2 GYPPAMAASDKYHGVAKFNVATGKQQKGTSANPSLTSVFAHTLIDIATEDRSVVGITAAMPGGTGMDLFGRRFPKRTYDVGIAEQHAVTFAAGMAVEGLKPFCCIYSTFLQRAYDQV 118
            GYPPA  ASDK HGVAKF++ATG Q KG S  PSLTS+FA++LID ATEDRSVVGITAAMPGGTGMD+FGRRFPKRTYDVGIAEQHAVTFAAGMA EGLKPFCCIYSTFLQR YDQV
Sbjct:  351 GYPPAEQASDKMHGVAKFDLATGVQVKGKSIAPSLTSIFANSLIDAATEDRSVVGITAAMPGGTGMDIFGRRFPKRTYDVGIAEQHAVTFAAGMACEGLKPFCCIYSTFLQRGYDQV 467          
BLAST of mRNA_H-elongata_contig54757.12869.1 vs. uniprot
Match: A0A7S2CRZ0_9STRA (1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CRZ0_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.710e-59
Identity = 100/119 (84.03%), Postives = 106/119 (89.08%), Query Frame = 0
Query:    1 MGYPPAMAASDKYHGVAKFNVATGKQQKGTSAN-PSLTSVFAHTLIDIATEDRSVVGITAAMPGGTGMDLFGRRFPKRTYDVGIAEQHAVTFAAGMAVEGLKPFCCIYSTFLQRAYDQV 118
            MGYPPAM ASDK HGVAKF++ATGKQ KG  A  PSLTSVFA+ LI +AT+DRSVVGITAAMPGGTGMDLFGRRFP RTYDVGIAEQHAVTFAA MA EGLKPFCCIYSTF+QR YDQV
Sbjct:  317 MGYPPAMKASDKMHGVAKFDLATGKQMKGKGAKAPSLTSVFANELIKVATDDRSVVGITAAMPGGTGMDLFGRRFPSRTYDVGIAEQHAVTFAAAMAAEGLKPFCCIYSTFMQRGYDQV 435          
BLAST of mRNA_H-elongata_contig54757.12869.1 vs. uniprot
Match: A0A7S1XP62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XP62_9STRA)

HSP 1 Score: 196 bits (499), Expect = 4.150e-58
Identity = 95/117 (81.20%), Postives = 103/117 (88.03%), Query Frame = 0
Query:    2 GYPPAMAASDKYHGVAKFNVATGKQQKGTSANPSLTSVFAHTLIDIATEDRSVVGITAAMPGGTGMDLFGRRFPKRTYDVGIAEQHAVTFAAGMAVEGLKPFCCIYSTFLQRAYDQV 118
            GYPPA  ASDKYHGV KF+V TGKQ K  S  PS TSVFA+ LI+ A +DR+V+GITAAMPGGTGMD+FGRRFP+RTYDVGIAEQHAVTFAAGMAVEGLKPFCCIYSTFLQR YDQV
Sbjct:  376 GYPPAERASDKYHGVPKFDVPTGKQFKSKSRTPSYTSVFANALIEEAADDRTVMGITAAMPGGTGMDIFGRRFPQRTYDVGIAEQHAVTFAAGMAVEGLKPFCCIYSTFLQRGYDQV 492          
BLAST of mRNA_H-elongata_contig54757.12869.1 vs. uniprot
Match: A0A7S1Z117_TRICV (1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z117_TRICV)

HSP 1 Score: 199 bits (506), Expect = 7.920e-58
Identity = 95/118 (80.51%), Postives = 105/118 (88.98%), Query Frame = 0
Query:    1 MGYPPAMAASDKYHGVAKFNVATGKQQKGTSANPSLTSVFAHTLIDIATEDRSVVGITAAMPGGTGMDLFGRRFPKRTYDVGIAEQHAVTFAAGMAVEGLKPFCCIYSTFLQRAYDQV 118
            MGYPPA  ASD+ HGVAKFN+ TG Q KG S+ PSLTS+FA+ LID ATEDR++VGITAAMPGGTGMD+FGRRFPKRT+DVGIAEQHAVT AAGMA EGLKPFCCIYSTF+QR YDQV
Sbjct:  351 MGYPPAEKASDRMHGVAKFNLGTGVQVKGKSSAPSLTSIFANALIDQATEDRTIVGITAAMPGGTGMDIFGRRFPKRTFDVGIAEQHAVTMAAGMACEGLKPFCCIYSTFMQRGYDQV 468          
BLAST of mRNA_H-elongata_contig54757.12869.1 vs. uniprot
Match: A0A7S1BKJ5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKJ5_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.830e-57
Identity = 95/118 (80.51%), Postives = 104/118 (88.14%), Query Frame = 0
Query:    2 GYPPAMAASDKYHGVAKFNVATGKQQKGTSAN-PSLTSVFAHTLIDIATEDRSVVGITAAMPGGTGMDLFGRRFPKRTYDVGIAEQHAVTFAAGMAVEGLKPFCCIYSTFLQRAYDQV 118
            GYPPA AASDK HGV KFN+ TG   KG     PSLTSVFA++LID+ATEDRS+VGITAAMPGGTGMD+FGRRFPKRT+DVGIAEQHAVTFAAGMA EGL+PFCCIYSTF+QR YDQV
Sbjct:  353 GYPPAEAASDKMHGVGKFNLGTGAPIKGPRPPAPSLTSVFANSLIDVATEDRSIVGITAAMPGGTGMDIFGRRFPKRTFDVGIAEQHAVTFAAGMACEGLRPFCCIYSTFMQRGYDQV 470          
BLAST of mRNA_H-elongata_contig54757.12869.1 vs. uniprot
Match: A0A7S0C144_9STRA (1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C144_9STRA)

HSP 1 Score: 196 bits (499), Expect = 5.890e-57
Identity = 95/117 (81.20%), Postives = 102/117 (87.18%), Query Frame = 0
Query:    2 GYPPAMAASDKYHGVAKFNVATGKQQKGTSANPSLTSVFAHTLIDIATEDRSVVGITAAMPGGTGMDLFGRRFPKRTYDVGIAEQHAVTFAAGMAVEGLKPFCCIYSTFLQRAYDQV 118
            GYPPA AASDK HGV KF++ TG Q K     PSLTS+FA+ LID ATEDR+VVGITAAMPGGTGMD+FGRRFPKRT+DVGIAEQHAVTFAAGMA EGLKPFCCIYSTFLQR YDQV
Sbjct:  322 GYPPAEAASDKMHGVGKFDLGTGVQFKSKGGQPSLTSIFANALIDQATEDRTVVGITAAMPGGTGMDIFGRRFPKRTFDVGIAEQHAVTFAAGMACEGLKPFCCIYSTFLQRGYDQV 438          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54757.12869.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8U2_ECTSI1.260e-7095.761-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Ec... [more]
A0A835ZBE2_9STRA1.570e-6587.391-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Tr... [more]
A0A7S2PQQ1_9STRA4.820e-6182.051-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Sk... [more]
B5YMM4_THAPS4.360e-6082.051-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Th... [more]
A0A6U3VSH6_9STRA7.480e-6085.471-deoxy-D-xylulose-5-phosphate synthase n=7 Tax=Li... [more]
A0A7S2CRZ0_9STRA2.710e-5984.031-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Fl... [more]
A0A7S1XP62_9STRA4.150e-5881.20Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1Z117_TRICV7.920e-5880.511-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Tr... [more]
A0A7S1BKJ5_9STRA3.830e-5780.51Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0C144_9STRA5.890e-5781.201-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Pr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005475Transketolase-like, pyrimidine-binding domainPFAMPF02779Transket_pyrcoord: 35..117
e-value: 6.7E-19
score: 68.2
NoneNo IPR availableGENE3D3.40.50.970coord: 31..118
e-value: 1.6E-33
score: 117.0
NoneNo IPR availablePANTHERPTHR43322:SF51-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE, CHLOROPLASTICcoord: 2..118
IPR005477Deoxyxylulose-5-phosphate synthasePANTHERPTHR43322FAMILY NOT NAMEDcoord: 2..118
IPR029061Thiamin diphosphate-binding foldSUPERFAMILY52518Thiamin diphosphate-binding fold (THDP-binding)coord: 11..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54757contigH-elongata_contig54757:137..2455 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54757.12869.1mRNA_H-elongata_contig54757.12869.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54757 107..2455 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54757.12869.1 ID=prot_H-elongata_contig54757.12869.1|Name=mRNA_H-elongata_contig54757.12869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MGYPPAMAASDKYHGVAKFNVATGKQQKGTSANPSLTSVFAHTLIDIATE
DRSVVGITAAMPGGTGMDLFGRRFPKRTYDVGIAEQHAVTFAAGMAVEGL
KPFCCIYSTFLQRAYDQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005475Transketolase-like_Pyr-bd
IPR005477Dxylulose-5-P_synthase
IPR029061THDP-binding