prot_H-elongata_contig54703.12863.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig54703.12863.1
Unique Name	prot_H-elongata_contig54703.12863.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	113

Homology

[Close]

BLAST of mRNA_H-elongata_contig54703.12863.1 vs. uniprot
Match: A0A6H5JY02_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY02_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.570e-27
Identity = 61/114 (53.51%), Postives = 79/114 (69.30%), Query Frame = 0

Query:    1 MPPKERKRDVLLDVYEQHTKNCTVCLGALRRVKQLLAVAKTSAVASLAWAVLRAARAPNTSTLT---SAFARNGIVLRAMLPGLAVTFASLMAVKVLETLHEAFYTSPYHHQDN 111
            +PP+ER R+ L +VYE HTK+CT C GAL+ VK++L  AKT+AV S  WAVLR ARA  T+      SA   N +  RAMLP +A+TFAS+ A+K+LE L   FYT  +HHQD+
Sbjct:  468 LPPRERNREDLFNVYENHTKSCTSCQGALKNVKKMLTTAKTAAVISFTWAVLRGARAVGTAAAAGSPSARVINTVTARAMLPAVALTFASVGAIKILEKLRGMFYTYSFHHQDS 581

[Close]

BLAST of mRNA_H-elongata_contig54703.12863.1 vs. uniprot
Match: D8LGA1_ECTSI (Rieske (2Fe-2S) region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA1_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.760e-24
Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 0

Query:    1 MPPKERKRDVLLDVYEQHTKNCTVCLGALRRVKQLLAVAKTSAVASLAWAVLRAARAPNTSTLT---SAFARNGIVLRAMLPGLAVTFASLMAVKVLETLHEAFYTSPYHHQDN 111
            +P +E KR+VL D YE HTK C+ CL AL+ + +LLA +KT+   S  W +LR ARA +T T     SA   N +  RA+LP +A+T ASL AVKVLE L   +YT  +HHQDN
Sbjct:  362 LPEREHKREVLFDYYEGHTKTCSTCLRALKNINKLLAASKTATAVSCTWGLLRGARAVSTPTAVGSRSASVVNAVTARAILPAVALTLASLGAVKVLEKLRGLYYTYSFHHQDN 475

[Close]

BLAST of mRNA_H-elongata_contig54703.12863.1 vs. uniprot
Match: A0A6H5KG92_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG92_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.340e-23
Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 0

Query:    1 MPPKERKRDVLLDVYEQHTKNCTVCLGALRRVKQLLAVAKTSAVASLAWAVLRAARAPNTSTLTSAFA--RNGIVLRAMLPGLAVTFASLMAVKVLETLHEAFYTSPYHHQDND 112
            +P +    DV+ D+YEQHTK+CT CLGAL+RV+Q +  AK S VASL WAVLRAA A +TS L S      N +  +AMLPG+ +  ASL   K+L +L   FY   Y HQ++D
Sbjct:  452 LPSRHDNPDVMWDIYEQHTKHCTACLGALKRVEQCITAAKVSTVASLTWAVLRAASAISTSILASPGTPPSNFVAAKAMLPGVLLMLASLKTTKMLGSLRRMFYVYKYVHQEHD 565

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig54703.12863.1 vs. uniprot

BLAST of mRNA_H-elongata_contig54703.12863.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5JY02_9PHAE	2.570e-27	53.51	Rieske domain-containing protein n=2 Tax=Ectocarpu...	[more]
D8LGA1_ECTSI	1.760e-24	50.00	Rieske (2Fe-2S) region n=1 Tax=Ectocarpus siliculo...	[more]
A0A6H5KG92_9PHAE	2.340e-23	50.00	Rieske domain-containing protein n=2 Tax=Ectocarpu...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 53..71
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 92..112
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..34
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 35..52
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 72..91
None	No IPR available	TMHMM	TMhelix		coord: 35..57
None	No IPR available	TMHMM	TMhelix		coord: 72..94

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig54703	contig	H-elongata_contig54703:1290..3196 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig54703.12863.1	mRNA_H-elongata_contig54703.12863.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig54703 2..3568 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig54703.12863.1 ID=prot_H-elongata_contig54703.12863.1|Name=mRNA_H-elongata_contig54703.12863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MPPKERKRDVLLDVYEQHTKNCTVCLGALRRVKQLLAVAKTSAVASLAWA
VLRAARAPNTSTLTSAFARNGIVLRAMLPGLAVTFASLMAVKVLETLHEA
FYTSPYHHQDND*