prot_H-elongata_contig54645.12853.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig54645.12853.1
Unique Name	prot_H-elongata_contig54645.12853.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	75

Homology

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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.820e-39
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 0

Query:    8 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIRTEKE 74
            +FRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRL+SAGQKVGLIAARRTGRLRGIRTEKE
Sbjct:  188 KFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254

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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.290e-32
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 0

Query:    8 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIR 70
            ++RVKRNEWP VRGVAMNPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++
Sbjct:  188 KYRVKRNEWPKVRGVAMNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVK 250

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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.290e-32
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 0

Query:    8 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIRTEKE 74
            ++RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  RL+SAGQKVGLIAARRTGRLRGI+   E
Sbjct:  188 KYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254

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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.650e-32
Identity = 55/63 (87.30%), Postives = 61/63 (96.83%), Query Frame = 0

Query:    8 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIR 70
            ++RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST+NRL+SAG+KVGLIAARRTGRLRGI+
Sbjct:  188 KYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTSNRLASAGKKVGLIAARRTGRLRGIK 250

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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: A0A7S1U069_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U069_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.680e-31
Identity = 52/63 (82.54%), Postives = 59/63 (93.65%), Query Frame = 0

Query:    8 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIR 70
            ++RVKRNEWP +RGVA NPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++
Sbjct:  188 KYRVKRNEWPKIRGVAKNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVK 250

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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: M4BJW7_HYAAE (Ribosomal_L2_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJW7_HYAAE)

HSP 1 Score: 113 bits (282), Expect = 8.590e-31
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0

Query:    8 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIR 70
            ++RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R + AG+KVGLIAARRTGRLRGI+
Sbjct:   51 KYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIK 113

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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: A0A418F530_9STRA (Ribosomal_L2_C domain-containing protein n=14 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418F530_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.970e-30
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 0

Query:    8 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIR-TEKE 74
            ++RVKRNEWPHVRGVAMNPVEHP GGGNHQHIGHPST  R   AG+KVGLIAARRTGRLRGI+ T+K+
Sbjct:  188 KYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDPPAGKKVGLIAARRTGRLRGIKKTDKD 255

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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: F0YEL9_AURAN (Ribosomal_L2_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEL9_AURAN)

HSP 1 Score: 115 bits (288), Expect = 4.010e-30
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 0

Query:    8 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIR 70
            ++RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R+ SAG+KVGLIAARRTGRLRG++
Sbjct:  188 KYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLK 250

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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: I2CPH3_NANGC (Large subunit ribosomal protein L8e n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH3_NANGC)

HSP 1 Score: 113 bits (283), Expect = 2.250e-29
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 0

Query:    8 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIRTEKE 74
            ++RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R + AG+KVGL+AARRTGRLRGI+   E
Sbjct:  188 KYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAE 254

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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: UPI001A454EC4 (Uncharacterized protein n=1 Tax=Belnapia mucosa TaxID=2804532 RepID=UPI001A454EC4)

HSP 1 Score: 107 bits (268), Expect = 2.870e-29
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 0

Query:    8 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIRTEKE 74
            +++ KRN WP VRGVAMNPVEHPFGGGNHQHIG PST  R + AG+KVGLIAARRTGRLRG +T +E
Sbjct:    1 KYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRHAPAGRKVGLIAARRTGRLRGTKTVQE 67

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot

BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G8U3_ECTSI	1.820e-39	97.01	Ribosomal_L2_C domain-containing protein n=3 Tax=E...	[more]
A0A7R9UAP5_9STRA	3.290e-32	85.71	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A835ZD66_9STRA	3.290e-32	83.58	Translation protein SH3-like domain-containing pro...	[more]
A0A7S2V227_9STRA	4.650e-32	87.30	Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep...	[more]
A0A7S1U069_9STRA	3.680e-31	82.54	Hypothetical protein n=2 Tax=Phaeomonas parva TaxI...	[more]
M4BJW7_HYAAE	8.590e-31	82.54	Ribosomal_L2_C domain-containing protein n=1 Tax=H...	[more]
A0A418F530_9STRA	1.970e-30	80.88	Ribosomal_L2_C domain-containing protein n=14 Tax=...	[more]
F0YEL9_AURAN	4.010e-30	82.54	Ribosomal_L2_C domain-containing protein n=1 Tax=A...	[more]
I2CPH3_NANGC	2.250e-29	77.61	Large subunit ribosomal protein L8e n=1 Tax=Nannoc...	[more]
UPI001A454EC4	2.870e-29	74.63	Uncharacterized protein n=1 Tax=Belnapia mucosa Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014726	Ribosomal protein L2, domain 3	GENE3D	4.10.950.10		coord: 4..68 e-value: 3.6E-28 score: 99.7
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 12..41 e-value: 8.1E-10 score: 39.0
None	No IPR available	PANTHER	PTHR13691:SF16	60S RIBOSOMAL PROTEIN L8	coord: 7..72
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 7..72
IPR022671	Ribosomal protein L2, conserved site	PROSITE	PS00467	RIBOSOMAL_L2	coord: 17..28
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 8..66

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig54645	contig	H-elongata_contig54645:770..994 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig54645.12853.1	mRNA_H-elongata_contig54645.12853.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig54645 770..994 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig54645.12853.1 ID=prot_H-elongata_contig54645.12853.1|Name=mRNA_H-elongata_contig54645.12853.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MFVAVIIRFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSS
AGQKVGLIAARRTGRLRGIRTEKE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014726	Ribosomal_L2_dom3
IPR022669	Ribosomal_L2_C
IPR002171	Ribosomal_L2
IPR022671	Ribosomal_L2_CS
IPR008991	Translation_prot_SH3-like_sf