prot_H-elongata_contig54602.12847.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig54602.12847.1
Unique Name	prot_H-elongata_contig54602.12847.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	110

Homology

[Close]

BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A6H5JNN2_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN2_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 6.190e-67
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 0

Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 110
            +VFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGR RDGGLRMGEMERDCLISHGCANFLRDRLF NSDAYRVHVC+KCGLIAVANLRKMSFECRGCKGKS+VSQ+
Sbjct:  509 KVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQI 618

[Close]

BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 7.120e-65
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 0

Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 110
            +VFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGR RDGGLRMGEMERDCLISHGCANFLRDRLF NSDAYRVHVC+KCGLIAVANLRKMSFECRGCKGKS+VSQ+
Sbjct: 1133 KVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQI 1242

[Close]

BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.200e-61
Identity = 98/110 (89.09%), Postives = 105/110 (95.45%), Query Frame = 0

Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 110
            +VFLGPTFYQRLKHLVDDKIHSRSRGPV  LTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLF NSDAYRVHVCN+CGLIA+ANLRK SFECRGC+ K+++SQV
Sbjct: 1047 KVFLGPTFYQRLKHLVDDKIHSRSRGPVAMLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFLNSDAYRVHVCNRCGLIAIANLRKQSFECRGCRNKTDISQV 1156

[Close]

BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A3R7BNG1_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BNG1_9STRA)

HSP 1 Score: 196 bits (498), Expect = 5.020e-60
Identity = 89/110 (80.91%), Postives = 102/110 (92.73%), Query Frame = 0

Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 110
            Q+F+GPTFYQRLKH+VDDKIHSRSRGPV  LTRQP+EGRAR+GGLRMGEMERDCLISHG ANFL DRLF NSDAYRVHVC+ CG+IA+ANLRKM+FECR C+ K+++SQV
Sbjct:  207 QIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPLEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDLCGIIAIANLRKMTFECRTCRNKTQISQV 316

[Close]

BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A7S3Y3D8_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3D8_HETAK)

HSP 1 Score: 196 bits (499), Expect = 6.980e-59
Identity = 88/110 (80.00%), Postives = 101/110 (91.82%), Query Frame = 0

Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 110
            +VFLGPTFYQRLKHLVDDKIH+RSRGPV  LTRQPMEGRA+DGGLRMGEMERDCL++HG ANFLRDR F NSDAYR HVCN CGL+A+ANLRKM FECRGC+ +++V+Q+
Sbjct:  326 KVFLGPTFYQRLKHLVDDKIHARSRGPVAMLTRQPMEGRAKDGGLRMGEMERDCLVAHGVANFLRDRFFANSDAYRAHVCNTCGLLAIANLRKMVFECRGCRNRTDVAQI 435

[Close]

BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A0A8YF22_ARUDO (DNA-directed RNA polymerase n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A0A8YF22_ARUDO)

HSP 1 Score: 184 bits (466), Expect = 1.170e-57
Identity = 83/109 (76.15%), Postives = 96/109 (88.07%), Query Frame = 0

Query:    2 VFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 110
            +FLGPT+YQRLKH+VDDKIHSR RGPV  LTRQP EGR+RDGGLR GEMERDC+I+HG A FL++RLF  SDAYRVHVC KCGLIA+ANL+K SFECRGCK K+++ QV
Sbjct:   14 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQV 122

[Close]

BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A7C9ANR9_OPUST (DNA-directed RNA polymerase n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ANR9_OPUST)

HSP 1 Score: 184 bits (467), Expect = 6.150e-57
Identity = 82/109 (75.23%), Postives = 97/109 (88.99%), Query Frame = 0

Query:    2 VFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 110
            +FLGPT+YQRLKH+VDDKIHSR RGPV  LTRQP EGR+RDGGLR GEMERDC+I+HG A+FL++RLF  SDAYRVHVC +CGLIA+ANL+K SFECRGCK K+++ QV
Sbjct:   75 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQV 183

[Close]

BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A418ATP0_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A418ATP0_9STRA)

HSP 1 Score: 196 bits (498), Expect = 8.150e-57
Identity = 89/110 (80.91%), Postives = 102/110 (92.73%), Query Frame = 0

Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 110
            Q+F+GPTFYQRLKH+VDDKIHSRSRGPV  LTRQP+EGRAR+GGLRMGEMERDCLISHG ANFL DRLF NSDAYRVHVC+ CG+IA+ANLRKM+FECR C+ K+++SQV
Sbjct:  598 QIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPLEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDLCGIIAIANLRKMTFECRTCRNKTQISQV 707

[Close]

BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A830DAR1_9LAMI (DNA-directed RNA polymerase n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830DAR1_9LAMI)

HSP 1 Score: 182 bits (461), Expect = 1.590e-56
Identity = 81/109 (74.31%), Postives = 96/109 (88.07%), Query Frame = 0

Query:    2 VFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 110
            +FLGPT+YQRLKH+VDDKIHSR RGPV  LTRQP EGR+RDGGLR GEMERDC+I+HG A+FL++RLF  SDAYRVHVC KCGL+A+ANL+K SFECR CK K+++ QV
Sbjct:   39 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEKCGLMAIANLKKHSFECRSCKNKTDIVQV 147

[Close]

BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A662XQG4_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQG4_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.950e-56
Identity = 90/110 (81.82%), Postives = 102/110 (92.73%), Query Frame = 0

Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 110
            Q+F+GPTFYQRLKH+VDDKIHSRSRGPV  LTRQPMEGRAR+GGLRMGEMERDCLISHG ANFL DRLF NSDAYRVHVC+ CG+IA+ANLRKM+FECR C+ K+++SQV
Sbjct:  804 QIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRTCRNKTQISQV 913

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot

BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JNN2_9PHAE	6.190e-67	94.55	DNA-directed RNA polymerase subunit beta n=1 Tax=E...	[more]
D7FHZ3_ECTSI	7.120e-65	94.55	DNA-directed RNA polymerase subunit beta n=1 Tax=E...	[more]
A0A835YQ41_9STRA	2.200e-61	89.09	DNA-directed RNA polymerase subunit beta n=1 Tax=T...	[more]
A0A3R7BNG1_9STRA	5.020e-60	80.91	DNA-directed RNA polymerase (Fragment) n=1 Tax=Aph...	[more]
A0A7S3Y3D8_HETAK	6.980e-59	80.00	DNA-directed RNA polymerase n=1 Tax=Heterosigma ak...	[more]
A0A0A8YF22_ARUDO	1.170e-57	76.15	DNA-directed RNA polymerase n=2 Tax=Mesangiosperma...	[more]
A0A7C9ANR9_OPUST	6.150e-57	75.23	DNA-directed RNA polymerase n=3 Tax=Opuntia strept...	[more]
A0A418ATP0_9STRA	8.150e-57	80.91	DNA-directed RNA polymerase subunit beta n=2 Tax=A...	[more]
A0A830DAR1_9LAMI	1.590e-56	74.31	DNA-directed RNA polymerase n=1 Tax=Phtheirospermu...	[more]
A0A662XQG4_9STRA	1.950e-56	81.82	DNA-directed RNA polymerase subunit beta n=2 Tax=N...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	PFAM	PF00562	RNA_pol_Rpb2_6	coord: 1..41 e-value: 4.0E-16 score: 59.1
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	GENE3D	2.40.270.10		coord: 1..27 e-value: 9.5E-10 score: 40.3
None	No IPR available	GENE3D	3.90.1800.10		coord: 28..110 e-value: 3.9E-34 score: 118.6
None	No IPR available	PANTHER	PTHR20856:SF7	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2	coord: 1..110
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1..109
IPR007641	RNA polymerase Rpb2, domain 7	PFAM	PF04560	RNA_pol_Rpb2_7	coord: 43..110 e-value: 4.8E-23 score: 81.4
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 1..110

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig54602	contig	H-elongata_contig54602:303..632 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig54602.12847.1	mRNA_H-elongata_contig54602.12847.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig54602 303..632 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig54602.12847.1 ID=prot_H-elongata_contig54602.12847.1|Name=mRNA_H-elongata_contig54602.12847.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEM
ERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRG
CKGKSEVSQV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007120	DNA-dir_RNAP_su2_dom
IPR037033	DNA-dir_RNAP_su2_hyb_sf
IPR007641	RNA_pol_Rpb2_7
IPR015712	DNA-dir_RNA_pol_su2