prot_H-elongata_contig54393.12816.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig54393.12816.1
Unique Name	prot_H-elongata_contig54393.12816.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	117

Homology

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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: D7FSP8_ECTSI (Multidrug Resistance associated Protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP8_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.710e-48
Identity = 87/117 (74.36%), Postives = 102/117 (87.18%), Query Frame = 0

Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTSR 117
            +RAFGFA+GG+ AAVALH RLL  V+ KP++FFD+TPSGR+VNRFSRDAFSVDDPL FHLN+LLAQ +GL AT  VLS+T+P+L  +F PLG VYA+LQRYYR SSRELRRLDSTSR
Sbjct: 1088 VRAFGFAFGGVRAAVALHRRLLTHVLGKPSAFFDITPSGRVVNRFSRDAFSVDDPLPFHLNVLLAQAAGLSATAVVLSSTSPVLAALFLPLGWVYAKLQRYYRSSSRELRRLDSTSR 1204

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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A6H5JKN8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN8_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.350e-47
Identity = 86/117 (73.50%), Postives = 101/117 (86.32%), Query Frame = 0

Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTSR 117
            +RAFGFA+GG+ AAVALH RLL+ V+ KP++FFDVTPSGR+VNRFSRDAFSVDDPL FHLN+LLAQ +GL  T  VLS+ +P+L  +F PLG VYA+LQRYYR SSRELRRLDSTSR
Sbjct:  570 VRAFGFAFGGVRAAVALHRRLLSHVLGKPSAFFDVTPSGRVVNRFSRDAFSVDDPLPFHLNVLLAQAAGLSVTAVVLSSASPVLAALFLPLGWVYAKLQRYYRSSSRELRRLDSTSR 686

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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A5F9DSU1_RABIT (ATP binding cassette subfamily C member 10 n=2 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9DSU1_RABIT)

HSP 1 Score: 127 bits (320), Expect = 7.590e-32
Identity = 68/114 (59.65%), Postives = 82/114 (71.93%), Query Frame = 0

Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDS 114
            LRA  FA G + AA ALHHRLL+RV+  P +FFD TP+GR++NRFS D   VDD L F LNILLA  +GLL  + VL +  P L+L+  PL VVY R+QR+YR SSRELRRL S
Sbjct:  959 LRAVLFAAGTLQAAAALHHRLLHRVLMAPVTFFDCTPTGRVLNRFSSDVACVDDSLPFILNILLANAAGLLGLLAVLGSGLPWLLLLLPPLSVVYYRVQRHYRASSRELRRLGS 1072

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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: G1SLM6_RABIT (ATP binding cassette subfamily C member 10 n=2 Tax=Oryctolagus cuniculus TaxID=9986 RepID=G1SLM6_RABIT)

HSP 1 Score: 127 bits (320), Expect = 7.590e-32
Identity = 68/114 (59.65%), Postives = 82/114 (71.93%), Query Frame = 0

Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDS 114
            LRA  FA G + AA ALHHRLL+RV+  P +FFD TP+GR++NRFS D   VDD L F LNILLA  +GLL  + VL +  P L+L+  PL VVY R+QR+YR SSRELRRL S
Sbjct:  985 LRAVLFAAGTLQAAAALHHRLLHRVLMAPVTFFDCTPTGRVLNRFSSDVACVDDSLPFILNILLANAAGLLGLLAVLGSGLPWLLLLLPPLSVVYYRVQRHYRASSRELRRLGS 1098

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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A5F9DN59_RABIT (ATP binding cassette subfamily C member 10 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9DN59_RABIT)

HSP 1 Score: 127 bits (320), Expect = 7.590e-32
Identity = 68/114 (59.65%), Postives = 82/114 (71.93%), Query Frame = 0

Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDS 114
            LRA  FA G + AA ALHHRLL+RV+  P +FFD TP+GR++NRFS D   VDD L F LNILLA  +GLL  + VL +  P L+L+  PL VVY R+QR+YR SSRELRRL S
Sbjct:  985 LRAVLFAAGTLQAAAALHHRLLHRVLMAPVTFFDCTPTGRVLNRFSSDVACVDDSLPFILNILLANAAGLLGLLAVLGSGLPWLLLLLPPLSVVYYRVQRHYRASSRELRRLGS 1098

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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A7R9YYW4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YYW4_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 9.900e-32
Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 0

Query:    2 RAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTS 116
            RA  FA+ G++AA  +H RLL+ V+  P +FFD+ PSGRI+NRFS D   +DD L F LNILLA  + L   + V+  T+P L+L+  P+GVVY RLQ YYR +SRE+RRLDS +
Sbjct:  126 RAVSFAYAGLAAAQRMHARLLHAVLCAPMAFFDLVPSGRIINRFSSDTSKIDDTLPFILNILLANCANLAGLLLVMVATSPTLLLLLLPMGVVYRRLQLYYRSTSREVRRLDSVA 240

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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A5J5BDX0_9ASTE (Uncharacterized protein n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5BDX0_9ASTE)

HSP 1 Score: 125 bits (314), Expect = 4.880e-31
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 0

Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTSR 117
            +RAF FA+GG+ AAV +H+RLL ++I  P +FFD TPSGRI+NRFS D +++DD L F LNILLA   GLL    VLS    + +L+  P   +Y++LQ YYR +SRELRRLDS SR
Sbjct:  966 VRAFSFAFGGLRAAVQVHNRLLQKLINAPVNFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIALVLSYVQVMFLLLLLPFWYIYSKLQFYYRSTSRELRRLDSVSR 1082

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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A5D2CEX4_GOSDA (Uncharacterized protein n=4 Tax=Gossypium TaxID=3633 RepID=A0A5D2CEX4_GOSDA)

HSP 1 Score: 124 bits (311), Expect = 1.180e-30
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 0

Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTSR 117
            +RAF FA+GG+ AAV +H+ LLN+VI  PA FFD TP GRI+NRFS D +++DD L F LNILLA   GLL    VLS      +L+  P   +Y++LQ +YR +SRELRRLDS SR
Sbjct:  297 VRAFSFAFGGLKAAVQVHNTLLNKVINAPAQFFDQTPGGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLFPFWYIYSKLQFFYRSTSRELRRLDSVSR 413

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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A8J6D899_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D899_9ROSI)

HSP 1 Score: 124 bits (311), Expect = 1.240e-30
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 0

Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTSR 117
            +RAF FA+GG+ AAV +H+ LLN+VI  PA FFD TP GRI+NRFS D +++DD L F LNILLA   GLL    VLS      +L+  P   +Y++LQ +YR +SRELRRLDS SR
Sbjct:  934 VRAFSFAFGGLKAAVQVHNTLLNKVINAPAQFFDQTPGGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLFPFWYIYSKLQFFYRSTSRELRRLDSVSR 1050

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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A1U8PEY7_GOSHI (ABC transporter C family member 13-like isoform X1 n=5 Tax=Gossypium TaxID=3633 RepID=A0A1U8PEY7_GOSHI)

HSP 1 Score: 124 bits (311), Expect = 1.240e-30
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 0

Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTSR 117
            +RAF FA+GG+ AAV +H+ LLN+VI  PA FFD TP GRI+NRFS D +++DD L F LNILLA   GLL    VLS      +L+  P   +Y++LQ +YR +SRELRRLDS SR
Sbjct:  972 VRAFSFAFGGLKAAVQVHNTLLNKVINAPAQFFDQTPGGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLFPFWYIYSKLQFFYRSTSRELRRLDSVSR 1088

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot

BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FSP8_ECTSI	2.710e-48	74.36	Multidrug Resistance associated Protein 1 n=1 Tax=...	[more]
A0A6H5JKN8_9PHAE	1.350e-47	73.50	ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
A0A5F9DSU1_RABIT	7.590e-32	59.65	ATP binding cassette subfamily C member 10 n=2 Tax...	[more]
G1SLM6_RABIT	7.590e-32	59.65	ATP binding cassette subfamily C member 10 n=2 Tax...	[more]
A0A5F9DN59_RABIT	7.590e-32	59.65	ATP binding cassette subfamily C member 10 n=1 Tax...	[more]
A0A7R9YYW4_9CHLO	9.900e-32	53.04	Hypothetical protein (Fragment) n=1 Tax=Chlamydomo...	[more]
A0A5J5BDX0_9ASTE	4.880e-31	55.56	Uncharacterized protein n=2 Tax=Nyssaceae TaxID=42...	[more]
A0A5D2CEX4_GOSDA	1.180e-30	55.56	Uncharacterized protein n=4 Tax=Gossypium TaxID=36...	[more]
A0A8J6D899_9ROSI	1.240e-30	55.56	Uncharacterized protein n=1 Tax=Gossypium anomalum...	[more]
A0A1U8PEY7_GOSHI	1.240e-30	55.56	ABC transporter C family member 13-like isoform X1...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036640	ABC transporter type 1, transmembrane domain superfamily	GENE3D	1.20.1560.10		coord: 1..117 e-value: 1.8E-15 score: 58.8
IPR036640	ABC transporter type 1, transmembrane domain superfamily	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 2..116
IPR011527	ABC transporter type 1, transmembrane domain	PFAM	PF00664	ABC_membrane	coord: 1..116 e-value: 2.5E-17 score: 63.4
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 1..117 score: 18.712
None	No IPR available	PANTHER	PTHR24223:SF330	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7	coord: 1..116
None	No IPR available	PANTHER	PTHR24223	FAMILY NOT NAMED	coord: 1..116
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..55
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 78..82
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 83..102
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 56..77
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 103..117
None	No IPR available	TMHMM	TMhelix		coord: 73..95

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig54393	contig	H-elongata_contig54393:583..1755 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig54393.12816.1	mRNA_H-elongata_contig54393.12816.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig54393 583..1755 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig54393.12816.1 ID=prot_H-elongata_contig54393.12816.1|Name=mRNA_H-elongata_contig54393.12816.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAF
SVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQR
YYRCSSRELRRLDSTSR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036640	ABC1_TM_sf
IPR011527	ABC1_TM_dom