prot_H-elongata_contig54385.12812.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54385.12812.1
Unique Nameprot_H-elongata_contig54385.12812.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length82
Homology
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BLAST of mRNA_H-elongata_contig54385.12812.1 vs. uniprot
Match: D7FY84_ECTSI (SGF29 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY84_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 6.070e-30
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 0 
Query:    1 SRAWILARVVGEKTPGRVELHDEDDASKVFELQTAEVLHLHDISSEVHKDDRVLAVFPDTTMFYCATVANNTPRMDGNSKVL 82
            S AWILARVV  K  G+VELHDEDDAS VFEL  ++V HL D+SS++ K D+VLAVFPDTT+FYCATVA ++PRMDGN+KVL
Sbjct:  217 SGAWILARVVQHKGYGKVELHDEDDASHVFELPISQVRHLEDLSSDLGKHDKVLAVFPDTTIFYCATVAKDSPRMDGNTKVL 298
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BLAST of mRNA_H-elongata_contig54385.12812.1 vs. uniprot
Match: A0A7S3XKW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKW5_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 1.830e-7
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0 
Query:    3 AWILARVVGEKTPGRV-ELHDEDDASKVFELQTAEVLHLHDISSEVHKDDRVLAVFPDTTMFY 64
            +WILARVV      +V  + DEDD +KV +L    VL L+D S+   K D VLA+FP+TT FY
Sbjct:  149 SWILARVVEFNVAKQVYTVQDEDDVTKVMDLDHNRVLRLNDGSTHFSKGDAVLAMFPETTSFY 211
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BLAST of mRNA_H-elongata_contig54385.12812.1 vs. uniprot
Match: A0A6V2GR38_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GR38_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.630e-5
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 0 
Query:    1 SRAWILARVVGEKT-PGRVELHDED-DASKVFELQTAEVLHLHDISSEVHKDDRVLAVFPDTTMFYCATVANNTPRMDG 77
            S  WILA+V+      G  +L DED +++K+F L  ++V+ L  +   + + D + AV+PDTT FY ATVA    ++ G
Sbjct:  222 STDWILAKVISHDLGTGMYKLSDEDVESNKIFNLPESQVVVLGGVD-RLSRGDIIYAVYPDTTSFYQATVAQAPRKVSG 299
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BLAST of mRNA_H-elongata_contig54385.12812.1 vs. uniprot
Match: A0A835YJG3_9STRA (SGF29 tudor-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJG3_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 4.980e-5
Identity = 31/68 (45.59%), Postives = 35/68 (51.47%), Query Frame = 0 
Query:    2 RAWILARVVGEKTPGR-VELHDEDDASKVFELQTAEVLHLHDISSEVHKDDRVLAVFPDTTMFYCATV 68
            +A ILARV          E  DEDD    F +Q   V+ L D S  + K    LAVFPDTT FY ATV
Sbjct:  206 QAMILARVDKYHADSEEYECTDEDDKDNTFVIQAQNVIRLADNSKGLDKGSECLAVFPDTTSFYRATV 273
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54385.12812.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FY84_ECTSI6.070e-3070.73SGF29 C-terminal domain-containing protein n=2 Tax... [more]
A0A7S3XKW5_HETAK1.830e-749.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V2GR38_9STRA2.630e-537.97Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A835YJG3_9STRA4.980e-545.59SGF29 tudor-like domain-containing protein n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.140coord: 43..82
e-value: 6.9E-6
score: 28.0
NoneNo IPR availablePANTHERPTHR21539:SF0SAGA-ASSOCIATED FACTOR 29coord: 3..74
IPR010750SGF29 tudor-like domainPFAMPF07039DUF1325coord: 3..78
e-value: 1.9E-12
score: 47.4
IPR010750SGF29 tudor-like domainPROSITEPS51518SGF29_Ccoord: 1..82
score: 23.38
IPR037802SAGA-associated factor 29PANTHERPTHR21539UNCHARACTERIZEDcoord: 3..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54385contigH-elongata_contig54385:506..2815 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54385.12812.1mRNA_H-elongata_contig54385.12812.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54385 506..2815 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54385.12812.1 ID=prot_H-elongata_contig54385.12812.1|Name=mRNA_H-elongata_contig54385.12812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
SRAWILARVVGEKTPGRVELHDEDDASKVFELQTAEVLHLHDISSEVHKD
DRVLAVFPDTTMFYCATVANNTPRMDGNSKVL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010750SGF29_tudor-like_dom
IPR037802SGF29