prot_H-elongata_contig54310.12804.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54310.12804.1
Unique Nameprot_H-elongata_contig54310.12804.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length91
Homology
[Close]
BLAST of mRNA_H-elongata_contig54310.12804.1 vs. uniprot
Match: D8LUD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUD0_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 8.890e-17
Identity = 47/89 (52.81%), Postives = 55/89 (61.80%), Query Frame = 0 
Query:    1 MDRQKILQGCRDGFAACYDIFKGSAAAEAGRETAPGDDGLPV-GTRASKKQNRTGAEVALDYFPDSTLSVSTDIGGNHFQPGRLIGEQR 88
            MDR+ ILQGCRDGFAACYD F G A + A    A  DDG  V G  A     R+GAEVAL+YFPDS LS   DI   + + G LI + +
Sbjct:  655 MDRRVILQGCRDGFAACYDAFVGPAKSLA---AAAADDGADVVGPLA-----RSGAEVALEYFPDSLLSTPADINATYLETGHLISDNQ 735
[Close]
BLAST of mRNA_H-elongata_contig54310.12804.1 vs. uniprot
Match: A0A6H5KFE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFE2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.220e-16
Identity = 46/89 (51.69%), Postives = 55/89 (61.80%), Query Frame = 0 
Query:    1 MDRQKILQGCRDGFAACYDIFKGSAAAEAGRETAPGDDGLPV-GTRASKKQNRTGAEVALDYFPDSTLSVSTDIGGNHFQPGRLIGEQR 88
            MDR+ ILQGCRDGFAACYD F G A + A    A  DDG  V G  A     R+GAE+AL+YFPDS LS   DI   + + G LI + +
Sbjct:  122 MDRRVILQGCRDGFAACYDAFVGPAKSLA---AAAADDGADVVGPLA-----RSGAEMALEYFPDSLLSTLADINATYLETGHLISDNQ 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54310.12804.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LUD0_ECTSI8.890e-1752.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFE2_9PHAE1.220e-1651.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54310contigH-elongata_contig54310:81..965 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54310.12804.1mRNA_H-elongata_contig54310.12804.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54310 64..1357 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54310.12804.1 ID=prot_H-elongata_contig54310.12804.1|Name=mRNA_H-elongata_contig54310.12804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MDRQKILQGCRDGFAACYDIFKGSAAAEAGRETAPGDDGLPVGTRASKKQ
NRTGAEVALDYFPDSTLSVSTDIGGNHFQPGRLIGEQRAL*
back to top