prot_H-elongata_contig54144.12783.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54144.12783.1
Unique Nameprot_H-elongata_contig54144.12783.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length229
Homology
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BLAST of mRNA_H-elongata_contig54144.12783.1 vs. uniprot
Match: D7G0W8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W8_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 8.490e-72
Identity = 127/233 (54.51%), Postives = 158/233 (67.81%), Query Frame = 0 
Query:    1 TLSPKAVRSRSRSPARSPLIGTSSSS--MIRSELGGQGGRVGENEEPLVSPGRTPNTFSLDGRIFKVFRGRSTRKNPPRRKRSFELKKVFTRVPAKL--ILSIVVAVVALVVFYGRGDGPRLVIRDAALSPGDRLKGGQYISFCTSIIATGCKPKYLLLNNDGSLGVYGGRDPRVRNAKLWSAGMGAKGNA--QSLYELIYTGDKIVLNKDGKMKWSSPVKSLPKNLQPWPFG 227
            T+ PKAVRSRS+SP RSPL  T+S +  +I ++ G      GE   PL+SP R  +  +   R+ K    R     P  ++ S   +     +PAKL  +LS+V   VA  +F+G GDGP+LV RDA L PGDRLKGGQYISFCTSIIATGCKPKY  L  DGSLGVYGG+ P  + AKLW+AG GAKG    ++ YEL+YTGD++VLNKDGK+KWSS VKSLPKN++PWP  
Sbjct:    3 TIEPKAVRSRSKSPTRSPLARTASKTNLVIDTQAGHDAADKGE---PLISPARF-SPITAGKRLLKPSSPRKITMRPVVKEESMLSRYFSQSLPAKLSAVLSVVAIAVAAALFFGEGDGPKLVKRDAPLFPGDRLKGGQYISFCTSIIATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGTGAKGGGGKEAFYELVYTGDRVVLNKDGKVKWSSSVKSLPKNMRPWPLA 231
[Close]
BLAST of mRNA_H-elongata_contig54144.12783.1 vs. uniprot
Match: A0A836C7P8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7P8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.650e-12
Identity = 48/138 (34.78%), Postives = 72/138 (52.17%), Query Frame = 0 
Query:   96 ILSIVVAVVALVVFYGRGDGPRLVIRDAALSPGDRLKGGQYISFCTSIIATGCKPKYLLLNNDGSLGVYGGRDPRVRNAKLWSAGMGAK-GNAQSLYELI---YTGDKIVLNKDGKM--------KWSSPVKSLPKNL 221
            I++++VA+VA+V++Y    GP LV RD  +  G  L+ G+Y++ C    + GCKP Y  +  DG L +Y G  P     KLW +G GAK G  ++  E      T   I L ++GK+         W  PV  LP+ +
Sbjct:  153 IVAVLVALVAVVLYYLPAGGPYLVSRDVPMREGQSLRAGEYMTACVG--SAGCKPMYFEMAADGELALYSGTAPTDSRQKLWGSGTGAKKGGRRASSESDAPQMTPPPIALLREGKLFIMQGDAVVWKYPVNRLPREV 288
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54144.12783.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0W8_ECTSI8.490e-7254.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C7P8_9STRA2.650e-1234.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..86
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 112..228
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 87..111
NoneNo IPR availableTMHMMTMhelixcoord: 87..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54144contigH-elongata_contig54144:290..3485 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54144.12783.1mRNA_H-elongata_contig54144.12783.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54144 290..3485 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54144.12783.1 ID=prot_H-elongata_contig54144.12783.1|Name=mRNA_H-elongata_contig54144.12783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
TLSPKAVRSRSRSPARSPLIGTSSSSMIRSELGGQGGRVGENEEPLVSPG
RTPNTFSLDGRIFKVFRGRSTRKNPPRRKRSFELKKVFTRVPAKLILSIV
VAVVALVVFYGRGDGPRLVIRDAALSPGDRLKGGQYISFCTSIIATGCKP
KYLLLNNDGSLGVYGGRDPRVRNAKLWSAGMGAKGNAQSLYELIYTGDKI
VLNKDGKMKWSSPVKSLPKNLQPWPFGP*
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