prot_H-elongata_contig54054.12775.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54054.12775.1
Unique Nameprot_H-elongata_contig54054.12775.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length193
Homology
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BLAST of mRNA_H-elongata_contig54054.12775.1 vs. uniprot
Match: A0A6H5JF99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JF99_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 4.200e-48
Identity = 102/195 (52.31%), Postives = 122/195 (62.56%), Query Frame = 0 
Query:    1 DGGTFHVKNGSSLAFMLP--VTFEDNLVEAGHSGGAVYAGGKVDFEYKATFLRNEAMSDADVDAGNGGAVAVGRQGSVTFHDFSSFSGNAVNSGGKGGAIANLGNLNFKRASYFYSNVAKGETADNGDELGGLGGAIYTEGGATTYFKRRTIMRSNEASNGGALYNAGTTELASRGFFRGNQAMGKHAADGGHIF 193
            DGG  +V++GSS  F +P  V FE N VEAG+SGG VYA            + NEA S  D  AG GGAVAVG +GS+ F     F+ N   SGG GGAIAN G+L F+R SYF+ N A  +   NGD  GG GGAIY   G+TT F RRTI   +EA++GGALYN G   L S GF RGN+AMG   A+GGHI+
Sbjct:  129 DGGAIYVESGSSATFDVPSKVNFEGNTVEAGYSGGVVYAXXXXXXXXXXXXISNEARSSGDEPAGYGGAVAVGPEGSLEFQGALEFTDNKAQSGGSGGAIANFGSLVFRRKSYFWFNTAAEDA--NGD--GGFGGAIYAGYGSTTEFFRRTIWFYSEAASGGALYNLGEVMLYSNGFIRGNKAMGSVKAEGGHIY 319
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54054.12775.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JF99_9PHAE4.200e-4852.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 19..43
e-value: 0.0033
score: 15.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54054contigH-elongata_contig54054:229..1626 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54054.12775.1mRNA_H-elongata_contig54054.12775.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54054 229..1626 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54054.12775.1 ID=prot_H-elongata_contig54054.12775.1|Name=mRNA_H-elongata_contig54054.12775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
DGGTFHVKNGSSLAFMLPVTFEDNLVEAGHSGGAVYAGGKVDFEYKATFL
RNEAMSDADVDAGNGGAVAVGRQGSVTFHDFSSFSGNAVNSGGKGGAIAN
LGNLNFKRASYFYSNVAKGETADNGDELGGLGGAIYTEGGATTYFKRRTI
MRSNEASNGGALYNAGTTELASRGFFRGNQAMGKHAADGGHIF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat