prot_H-elongata_contig53877.12749.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig53877.12749.1
Unique Nameprot_H-elongata_contig53877.12749.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length129
Homology
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BLAST of mRNA_H-elongata_contig53877.12749.1 vs. uniprot
Match: A0A6H5K335_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K335_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 8.910e-47
Identity = 88/124 (70.97%), Postives = 98/124 (79.03%), Query Frame = 0 
Query:    3 QWLLALCAQFWRGFRFFGKPPLGTTAGVIVCLMIYRRKVGLANMALAASVLSGLNPLVVLAVMLAWKLFARTKFLPKGCRHGP----PEGLGEEKLSDDFTREKVTKLDGE-YDNIVVGSDLGG 121
            QWLL LCAQ WR F  FGKPPLGTTAGV+V LMIYRRKVG  NM+LAA+ LSGLNPLVV+AV LAWKL+A TKFLP+GCR  P    PE LG +KLSDDF   KV+   GE YD++VVGSDLGG
Sbjct:   88 QWLLGLCAQLWRSFHLFGKPPLGTTAGVVVGLMIYRRKVGFVNMSLAAAALSGLNPLVVVAVALAWKLWASTKFLPRGCRLNPEYEAPEDLGVDKLSDDFEPAKVSTAPGEEYDHVVVGSDLGG 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53877.12749.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K335_9PHAE8.910e-4770.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 69..128
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..17
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..68
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..42
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 18..37
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 46..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53877contigH-elongata_contig53877:1721..3422 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53877.12749.1mRNA_H-elongata_contig53877.12749.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig53877 1721..3422 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig53877.12749.1 ID=prot_H-elongata_contig53877.12749.1|Name=mRNA_H-elongata_contig53877.12749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MEQWLLALCAQFWRGFRFFGKPPLGTTAGVIVCLMIYRRKVGLANMALAA
SVLSGLNPLVVLAVMLAWKLFARTKFLPKGCRHGPPEGLGEEKLSDDFTR
EKVTKLDGEYDNIVVGSDLGGEVTGREE*
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