prot_H-elongata_contig53696.12725.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig53696.12725.1
Unique Nameprot_H-elongata_contig53696.12725.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length268
Homology
BLAST of mRNA_H-elongata_contig53696.12725.1 vs. uniprot
Match: A0A6H5JVW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW6_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 5.920e-41
Identity = 117/300 (39.00%), Postives = 157/300 (52.33%), Query Frame = 0
Query:    3 FRKVTERDVLTVTVLDRAT---SASKDGRDG--YITEVEPLRCTHWGVGVRPMHRTCAVAAPEAAMGFAAG------------------------------ISTVQLSVSWAPEMRLRKPLSLVAVAGGYTRALLSSKLDRSLATTADLTLDLMAHIS--VVLESPRKKRWARAAIVASVAGLSLGLPLGLTWLLAVSLFLVPLMMVL----AVTAFLLTPVVLTVVWLLACTTPACERLWRPLIVWAGTRSSLVRKLFLLPV-------GNAVFDREETMLKRGVENEA--DDAGQGWV 252
            F  VTERDVL VTVLDR++   SA+ DGR    Y+ E +PLRCTHWG G RP  RTC VA PE A   A+G                               STVQL++ W+P +RL++PLSLVA AG  T  ++S K+DR  A   +L L      S   +   PR K    AA+VA    +SLG  +    ++A +   +P+M+ L    A T   L P  L + W+ ACT PACE+LWRPL+VW GTR  L R+L LLP+       G      +  +L +G+E  A  ++  + W+
Sbjct:   68 FHGVTERDVLMVTVLDRSSPPSSAAPDGRTRPLYVAEAKPLRCTHWGSGGRPTRRTCVVAPPEEAQELASGGSAVDRDGGDPRGRGGATSGVGSEVLRRGGESTVQLAICWSPAIRLKRPLSLVARAGRLTARVVSRKIDRPAAAVLNLGLGGAEKASDFFLFGDPRLKA---AALVAFAVSMSLGSAV----VVAAAACFLPVMLALSAAAAATFATLGPPALALTWVFACTGPACEQLWRPLLVWTGTRWGLFRRLLLLPLEIEAESLGEGGDGGDRGVLLKGLETSAMGEETARRWL 360          
BLAST of mRNA_H-elongata_contig53696.12725.1 vs. uniprot
Match: D7FN99_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN99_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.250e-24
Identity = 83/215 (38.60%), Postives = 108/215 (50.23%), Query Frame = 0
Query:   28 RDGYITEVEPLRCTHWGVGVRPMHRTCAVAAPEAAMGFAAGIS------------------------------TVQLSVSWAPEMRLRKPLSLVAVAGGYTRALLSSKLDRSLATTADLTLDLMAHISVVL--ESPRKKRWARAAIVASVAGLSLGLPLGLTWLLAVSLFLVPLMMVL----AVTAFLLTPVVLTVVWLLACTTPACERLWRPLI 206
            R  Y+ E +PLRCTHWG G RP  RTC VA  E     A+G S                              TVQL++ W+P +RL++PLSLVA AG  T  ++S K+DR  A   +L L      S  L    PR K    AA+VAS   LSLG  +    ++A +   +P+M+ L    A T   L P  L + W+ ACT PACE+LWRPL+
Sbjct:   71 RPPYVAEAKPLRCTHWGSGGRPTRRTCVVAPLEEVQELASGASAVGRNGVDPRGRGGANSGGWSEVVRRGGESTVQLAICWSPAIRLKRPLSLVARAGRLTAHVVSRKIDRPAAAVLNLGLGGAEKASDFLFFGDPRLKA---AALVASAVSLSLGSAV----VVAAAACFLPVMLALSAAAAATFATLAPPALALTWVFACTGPACEQLWRPLL 278          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53696.12725.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVW6_9PHAE5.920e-4139.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN99_ECTSI2.250e-2438.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 139..161
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 162..166
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 194..267
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..138
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 167..193
NoneNo IPR availableTMHMMTMhelixcoord: 171..193
NoneNo IPR availableTMHMMTMhelixcoord: 139..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53696contigH-elongata_contig53696:1402..2784 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53696.12725.1mRNA_H-elongata_contig53696.12725.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig53696 842..3305 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig53696.12725.1 ID=prot_H-elongata_contig53696.12725.1|Name=mRNA_H-elongata_contig53696.12725.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=268bp
MTFRKVTERDVLTVTVLDRATSASKDGRDGYITEVEPLRCTHWGVGVRPM
HRTCAVAAPEAAMGFAAGISTVQLSVSWAPEMRLRKPLSLVAVAGGYTRA
LLSSKLDRSLATTADLTLDLMAHISVVLESPRKKRWARAAIVASVAGLSL
GLPLGLTWLLAVSLFLVPLMMVLAVTAFLLTPVVLTVVWLLACTTPACER
LWRPLIVWAGTRSSLVRKLFLLPVGNAVFDREETMLKRGVENEADDAGQG
WVREILRHTCVWVYCIF*
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