prot_H-elongata_contig5354.12709.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5354.12709.1
Unique Nameprot_H-elongata_contig5354.12709.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length197
Homology
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BLAST of mRNA_H-elongata_contig5354.12709.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 5.700e-9
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0 
Query:   48 LASVPREAPLLPSIYVESLAAVERVVLDLIDSSRQTPAVHYLVGPEGSGKTLLASEVVREPR 109
            LA +PREAP+LP+ YV+  A +E VV DL    R   A H L+G  G GKTL+AS VVR+ R
Sbjct:  232 LAEIPREAPVLPTTYVQRTAMLEEVVDDLTHPHRSASATHCLLGMGGGGKTLIASSVVRDDR 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5354.12709.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH19_ECTSI5.700e-953.23NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5354contigH-elongata_contig5354:7391..8000 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5354.12709.1mRNA_H-elongata_contig5354.12709.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5354 7304..8000 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5354.12709.1 ID=prot_H-elongata_contig5354.12709.1|Name=mRNA_H-elongata_contig5354.12709.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
MLVALAARSNGDRDKLVRILNDDGGDSGNGSDPETEEHRNAAAVGEKLAS
VPREAPLLPSIYVESLAAVERVVLDLIDSSRQTPAVHYLVGPEGSGKTLL
ASEVVREPRTESSGSPRGVTARRPTPPCFSSAWRVILTPRLRGTLQQTRC
ITPTPATTSAGSETPQSRETFGAWWYSTTRGTLRLWRPSRARVFMR*
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