prot_H-elongata_contig53522.12701.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig53522.12701.1
Unique Nameprot_H-elongata_contig53522.12701.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length43
Homology
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BLAST of mRNA_H-elongata_contig53522.12701.1 vs. uniprot
Match: D8LKG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG1_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.610e-16
Identity = 36/42 (85.71%), Postives = 41/42 (97.62%), Query Frame = 0 
Query:    1 KDEDLRFQLRRIPGCPLVYVSRTVLLMEQPSGKSKAEFEKAE 42
            +DE+LR +LRRIPGCPLV+VSRTVL+MEQPSGKSKAEFEKAE
Sbjct:   87 QDENLRVRLRRIPGCPLVFVSRTVLVMEQPSGKSKAEFEKAE 128
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BLAST of mRNA_H-elongata_contig53522.12701.1 vs. uniprot
Match: A0A6H5KVJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.080e-15
Identity = 35/42 (83.33%), Postives = 41/42 (97.62%), Query Frame = 0 
Query:    1 KDEDLRFQLRRIPGCPLVYVSRTVLLMEQPSGKSKAEFEKAE 42
            +DE+LR +LRR+PGCPLV+VSRTVL+MEQPSGKSKAEFEKAE
Sbjct:  144 QDENLRMRLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAE 185
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BLAST of mRNA_H-elongata_contig53522.12701.1 vs. uniprot
Match: A0A836CFL8_9STRA (Fcf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.160e-9
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 0 
Query:    1 KDEDLRFQLRRIPGCPLVYVSRTVLLMEQPSGKSKAEFEKAE 42
            +DE+LR +LR + GCPL+Y+S+TVLLMEQ SGK+KA FE  E
Sbjct:  122 QDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALE 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53522.12701.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKG1_ECTSI1.610e-1685.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVJ1_9PHAE3.080e-1583.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFL8_9STRA3.160e-964.29Fcf1-domain-containing protein n=1 Tax=Tribonema m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006984rRNA-processing protein Fcf1/Utp23PFAMPF04900Fcf1coord: 1..29
e-value: 6.7E-6
score: 26.4
NoneNo IPR availableGENE3D3.40.50.1010coord: 1..37
e-value: 9.7E-8
score: 33.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53522contigH-elongata_contig53522:268..396 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53522.12701.1mRNA_H-elongata_contig53522.12701.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig53522 268..396 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig53522.12701.1 ID=prot_H-elongata_contig53522.12701.1|Name=mRNA_H-elongata_contig53522.12701.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
KDEDLRFQLRRIPGCPLVYVSRTVLLMEQPSGKSKAEFEKAEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006984Fcf1/Utp23