prot_H-elongata_contig53518.12698.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig53518.12698.1
Unique Name	prot_H-elongata_contig53518.12698.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	176

Homology

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BLAST of mRNA_H-elongata_contig53518.12698.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 3.740e-38
Identity = 76/187 (40.64%), Postives = 116/187 (62.03%), Query Frame = 0

Query:    2 IVVVPGIGRNLFSVITAVQKGIVTIFDFENPRLEGFNVTVLLRSE----SGNLY-SFVLDLSVDGYGAKE-------LAMNAVANAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDACTVRKAQQLAHPKTATHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 176
            +V+VPG+G NLFSV  A+  G+ ++F  +NPRLE  +  V ++ +    +G +  S  + L  +  G +        LA+  V  A +WHRR+GH++ +SLD+LR++  +GI + G V DC AC + K+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K
Sbjct:  489 VVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674

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BLAST of mRNA_H-elongata_contig53518.12698.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 7.210e-38
Identity = 75/187 (40.11%), Postives = 116/187 (62.03%), Query Frame = 0

Query:    2 IVVVPGIGRNLFSVITAVQKGIVTIFDFENPRLEGFNVTVLLRSE----SGNLY-SFVLDLSVDGYGAKE-------LAMNAVANAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDACTVRKAQQLAHPKTATHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 176
            +++VPG+G NLFSV  A+  G+ ++F  +NPRLE  +  V ++ +    +G +  S  + L  +  G +        LA+  V  A +WHRR+GH++ +SLD+LR++  +GI + G V DC AC + K+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K
Sbjct:  489 VMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674

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BLAST of mRNA_H-elongata_contig53518.12698.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 4.600e-37
Identity = 73/183 (39.89%), Postives = 110/183 (60.11%), Query Frame = 0

Query:    5 VPGIGRNLFSVITAVQKGIVTIFDFENPRLEGFNVTVLLRSE----SGNLY-SFVLDLSVDGYGAKELAMNA------VANAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDACTVRKAQQLAHPKTATHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 176
            VPG+G NLFSV  A+  G+ ++F  +NPRLE  +  V ++ +    +G +  S  + L  +  G +            V  A +WHRR+GH++ +SLD+LR++  +GI + G V DC AC + K+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K
Sbjct:  614 VPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLPLRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 796

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BLAST of mRNA_H-elongata_contig53518.12698.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.860e-36
Identity = 74/187 (39.57%), Postives = 113/187 (60.43%), Query Frame = 0

Query:    2 IVVVPGIGRNLFSVITAVQKGIVTIFDFENPRLEGFNVTVLLRSE----SGNLY-SFVLDLSVDGYGAKE-------LAMNAVANAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDACTVRKAQQLAHPKTATHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 176
            +V+VPG+G NLFSV  A+  G+ ++F  +NPRLE  +  V ++ +    +G +  S  + L  +  G +        LA+  V  A +WHRR+GH++ +SLD+LR++  +GI + G V DC AC + K+ Q  HPK A + V+ PFQL + D  GPFT   +GG+KY +K  D++TKW  V L+  K
Sbjct:  394 VVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDK 579

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BLAST of mRNA_H-elongata_contig53518.12698.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.300e-33
Identity = 76/187 (40.64%), Postives = 113/187 (60.43%), Query Frame = 0

Query:    2 IVVVPGIGRNLFSVITAVQKGIVTIFDFENPRLEGFNV-----TVLLRSESGN-LYSFVLDLSVDGYGAKEL--AMNAVA----NAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDACTVRKAQQLAHPKTATHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 176
            +++VPG+G NLFSV  A+ KG+ T+F  +NPRLE  +V     T+ + + +G  +YS  + L  +  G   L  A +A+A    +A +WHRR+GH++ ++LD+LRK    G+ + G V  C  C + K+ Q  HPK AT+ V RPFQ    D + PFTP A+GG KY +K  D+ TKW  + L+  K
Sbjct:  415 VILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTVLGDAPDALALKVESADLWHRRMGHINGKNLDVLRKEQVNGVDYIGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQ---HDTLSPFTPTALGGSKYATKFVDQQTKWAEIVLMKDK 598

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BLAST of mRNA_H-elongata_contig53518.12698.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.790e-33
Identity = 74/177 (41.81%), Postives = 108/177 (61.02%), Query Frame = 0

Query:    9 GRNLFSVITAVQKGIVTIFDFENPRLEGFNV-----TVLLRSESGN-LYSFVLDLSVDGYGAKEL--AMNAVA----NAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDACTVRKAQQLAHPKTATHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLL 173
            G NLFSV  A+ KG+ T+F  +NPRLE  +V     T+ + + +G  +YS  + L  +  G   L  A +A+A    +A +WHRR+GH++ +SLD+LRK    G+ + G V+DC  C + K+ Q  HPK  T+ V RPFQ    D +GPFTP A+GG+KY +K  D+ TKW  + L+
Sbjct:  208 GTNLFSVTLAMLKGVETLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPGGPTVLGDAPDALALKVESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLM 384

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BLAST of mRNA_H-elongata_contig53518.12698.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.960e-32
Identity = 71/187 (37.97%), Postives = 108/187 (57.75%), Query Frame = 0

Query:    2 IVVVPGIGRNLFSVITAVQKGIVTIFDFENPRLEGFNV-----TVLLRSESGN-LYSFVLDLSVDGYG------AKELAMNAVANAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDACTVRKAQQLAHPKTATHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 176
            +++VPG+G NLFSV  A+ KG+ T+F  +NPRLE  +V     T+ + + +G  +YS  + L  +  G      A +     V +A +WHRR+G ++ +SLD+LRK+    + + G V DC  C + K+ Q  HPK AT+ V RPFQ      + PFTP  +GG+K  +K  D+ TKW  + L+  K
Sbjct:  668 VILVPGLGTNLFSVTLAMLKGMATLFHPDNPRLESRDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTILGDAPDALALKVESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVHTLRPFTPTVLGGFKNATKFVDQQTKWAKIVLMKDK 854

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BLAST of mRNA_H-elongata_contig53518.12698.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.940e-31
Identity = 64/143 (44.76%), Postives = 88/143 (61.54%), Query Frame = 0

Query:   36 GFNVTVLLRSESGNLYSFVLDLSVDGYGAKELAMNA--VANAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDACTVRKAQQLAHPKTATHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 176
            G  V  L   E   LY F +DL   G    E++  A  V +A +WHRR+GH+H +SLDILRK  G G+ + G +S CD C V  ++Q  HPK A++  +RPFQL   DLMGPF+P A+GG+ Y+ K  D++ KW  V+L+  K
Sbjct:  229 GHAVLFLNFKECDELYHFTMDLPETG----EISGVALPVKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEK 367

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BLAST of mRNA_H-elongata_contig53518.12698.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 4.730e-29
Identity = 75/194 (38.66%), Postives = 104/194 (53.61%), Query Frame = 0

Query:    4 VVPGIGRNLFSVITAVQKGIVTIFDFENPRLEGFNVTVLLRSESGNLYSFVLDLS----VDGYGAKELA----------MNAVA----NAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDACTVRKAQQLAHPKTATHKVNRPFQLCYGDLMGPFTPVAI---GGYKYVSKITDEYTKWTAVYLLTTK 176
            +VPG+GRN+FS  + ++KG+  + +   P L      + L  +  +     LD++    V   G K L            NAV     +A  WHRRLGHL+A+SLDILRK  GTG+ +  ++S C  C + K +Q  HPK +T +++RP QL     MGP  P A    G + YV KITD+YTK   VYLL  K
Sbjct:  242 IVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTFQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPAKYKGGSFPYVRKITDDYTKMKKVYLLRKK 435

[Close]

BLAST of mRNA_H-elongata_contig53518.12698.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.780e-28
Identity = 76/196 (38.78%), Postives = 104/196 (53.06%), Query Frame = 0

Query:    4 VVPGIGRNLFSVITAVQKGIVTIFDFENPRLE-------GFNVTVLLRSESGNLYSFVLDLSVDGYGAK------ELAMNAVANAQV----------WHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDACTVRKAQQLAHPKTATHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 176
            VVPG+GR+LFS  TA +KG  TI   + PR+E       G  + ++LR E G LY   LD+ +D    +      E  MN   N+ V          WHRRL H H   ++   +   TG+     +  C+ C ++K+ Q  HPKTA H   +P Q  Y DL+GP +P A GG+ YVSK TDEY++   VYL+ TK
Sbjct:  378 VVPGLGRHLFSTGTAQKKGANTIMS-DQPRIELPATSRDGSTIALVLR-EVGTLY--FLDVRLDTNQCERRRRITEENMNTYENSYVAAPRAEPYNLWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTK 569

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig53518.12698.1 vs. uniprot

BLAST of mRNA_H-elongata_contig53518.12698.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KJN3_9PHAE	3.740e-38	40.64	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5J842_9PHAE	7.210e-38	40.11	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJH6_9PHAE	4.600e-37	39.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JYB5_9PHAE	2.860e-36	39.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J9Q7_9PHAE	1.300e-33	40.64	gag_pre-integrs domain-containing protein n=1 Tax=...	[more]
A0A6H5KXM1_9PHAE	1.790e-33	41.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVF6_9PHAE	2.960e-32	37.97	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1J1_9PHAE	1.940e-31	44.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KMG5_9PHAE	4.730e-29	38.66	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KY84_9PHAE	1.780e-28	38.78	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 124..176 e-value: 1.8E-6 score: 29.2
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 70..117 e-value: 1.9E-6 score: 27.6
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 7..176
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 7..176
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 130..175

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig53518	contig	H-elongata_contig53518:1..528 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig53518.12698.1	mRNA_H-elongata_contig53518.12698.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig53518 1..528 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig53518.12698.1 ID=prot_H-elongata_contig53518.12698.1|Name=mRNA_H-elongata_contig53518.12698.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
DIVVVPGIGRNLFSVITAVQKGIVTIFDFENPRLEGFNVTVLLRSESGNL
YSFVLDLSVDGYGAKELAMNAVANAQVWHRRLGHLHAQSLDILRKRYGTG
ITFEGAVSDCDACTVRKAQQLAHPKTATHKVNRPFQLCYGDLMGPFTPVA
IGGYKYVSKITDEYTKWTAVYLLTTK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR025724	GAG-pre-integrase_dom
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf