prot_H-elongata_contig53409.12680.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig53409.12680.1
Unique Nameprot_H-elongata_contig53409.12680.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length402
Homology
BLAST of mRNA_H-elongata_contig53409.12680.1 vs. uniprot
Match: A0A6H5KKW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW1_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.110e-41
Identity = 151/435 (34.71%), Postives = 209/435 (48.05%), Query Frame = 0
Query:    1 MDVDLGVGLGDDLGGFEGFDELLSNPNQ-ADFFKFCVLEDGVTQHDPRAPFVTTLPFSGSTDTSA--------------NQVGLEEYNATYDEWNRGQTREITKLDMTNAALMYATGKPRTRKRLEDDSSLEATEAAHPILKRRASAGPSATKKMQEFPCTNVLHSNVSGGDPSAKSTSFALEIPLDAGEKFKLAGVPPGWG--LAGARPTRVRSTPRMVAPRGAIKVKREVMSVSTRP-RISVFMSSTAARSGTKKHGGLSVTSLDGNPRASTLPRLSSPVMRDNHGPSPQASPRVPNAAPKRIKGLRVVVPRSRSQAEQRVVDSNPPVVAMGSRRSTSSSDGV------------------HAVPRLHRASSVGALTIAGSGDVVSRSQILSPTGSIIQSCELSEQLAGRSQRRNLVFKVFGSG-SRTSRPTS 398
            MDVD+G+GLGDDLGGFEGFD + + PN  +DFFKFC +ED   Q   +   +T   F G    ++              + V  E+ +     W    + E T+    N  L    GKP+ RKR ++D +L + E+  P++KRR+S     T  +   P      S   G +   KS SF +     AG    ++   PG    +  ++P +         P GAIKV   V S + RP RISVFMS++                      A +   + +     + G       R  +A  +R+K LR+ + R RS AE+ VVD  P VVAMGS    +S+  +                    VP L RAS+VGALTIAGS +V+S S +LS +G IIQSCELS+++    QRRNLV +VFGSG S   RP S
Sbjct:   12 MDVDIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIEDTQQQQHQQGMAITNSAFQGPPSPASMFAHQPKVSDFGQESWVPGEQQHLPIQAWPPTISSEPTQCVNPNLLLPIG-GKPKARKRHDEDEALVSKESVFPVMKRRSS-----TASISMNPSPPPTSSQQQGLE---KSHSFCVTT-ASAGWAPAVSHQQPGVARHVGSSQPPQQGGVAS--PPGGAIKVNTNVTSGTVRPPRISVFMSNSGRXXXXXXXXXXXXXXXXXAAPAPSPSMMPTAPGSYSGGVLEPTMDRTASAQAQRLKDLRITM-RDRSVAEKYVVDHTPAVVAMGSPHHLNSTSALLFSEDDHFTATASGSAAGPTVPSLRRASTVGALTIAGS-EVMSTSPVLSSSGRIIQSCELSDRVGDGGQRRNLVCRVFGSGGSPFMRPAS 432          
BLAST of mRNA_H-elongata_contig53409.12680.1 vs. uniprot
Match: D7G817_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G817_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 6.800e-16
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = 0
Query:    1 MDVDLGVGLGDDLGGFEGFDELLSNPNQ-ADFFKFCVLEDGVTQHDPRAPFVTTLPFSGS---TDTSANQVGLEEYNATYDEWNRGQTREI--------TKLDMTNAA----LMYATGKPRTRKRLEDDSSLEATEAAHPILKRRASAG-------PSATKKMQE 142
            MD+D+G+GLGDDLGGFEGFD + + PN  +DFFKFC +ED   QH  +   +T   F G      T  +Q  + ++    + W  G  +++        T  + T       L+ + GKPR RKR ++D +L + E+  P++KRR+S         P  T   QE
Sbjct:   12 MDMDIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIEDTQQQHHQQDMAITNSAFQGPPSPASTFGHQPKVSDFGQ--ESWIPGGQQQLPIQAWPLTTSSEPTQRVNPNLLLPSGGKPRARKRHDEDEALVSKESVFPVIKRRSSTASISMNRSPPPTSSQQE 174          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53409.12680.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKW1_9PHAE1.110e-4134.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G817_ECTSI6.800e-1635.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53409contigH-elongata_contig53409:1221..2907 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53409.12680.1mRNA_H-elongata_contig53409.12680.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig53409 1221..2907 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig53409.12680.1 ID=prot_H-elongata_contig53409.12680.1|Name=mRNA_H-elongata_contig53409.12680.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=402bp
MDVDLGVGLGDDLGGFEGFDELLSNPNQADFFKFCVLEDGVTQHDPRAPF
VTTLPFSGSTDTSANQVGLEEYNATYDEWNRGQTREITKLDMTNAALMYA
TGKPRTRKRLEDDSSLEATEAAHPILKRRASAGPSATKKMQEFPCTNVLH
SNVSGGDPSAKSTSFALEIPLDAGEKFKLAGVPPGWGLAGARPTRVRSTP
RMVAPRGAIKVKREVMSVSTRPRISVFMSSTAARSGTKKHGGLSVTSLDG
NPRASTLPRLSSPVMRDNHGPSPQASPRVPNAAPKRIKGLRVVVPRSRSQ
AEQRVVDSNPPVVAMGSRRSTSSSDGVHAVPRLHRASSVGALTIAGSGDV
VSRSQILSPTGSIIQSCELSEQLAGRSQRRNLVFKVFGSGSRTSRPTSGP
H*
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