prot_H-elongata_contig52870.12608.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig52870.12608.1
Unique Name	prot_H-elongata_contig52870.12608.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	107

Homology

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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 4.300e-48
Identity = 83/106 (78.30%), Postives = 95/106 (89.62%), Query Frame = 0

Query:    2 TRRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            TRRDGR ANQIRPLA EQGILNRADGSARFVQGNTSVLAA YGPAPAKS RM+++EGA ++V F+PESG++S  DAE E LLRRSLEEV+LRSRYPR +VS++IQV
Sbjct:    4 TRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQV 109

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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A067CJ13_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC)

HSP 1 Score: 107 bits (268), Expect = 6.640e-27
Identity = 58/105 (55.24%), Postives = 72/105 (68.57%), Query Frame = 0

Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR   +IRPLA EQG+LNRADGSARF  G TSVLA+  GPA AK  R +KA GA +EV F+ E G  S  D E E++LR + E +I+   +PR +VSI +QV
Sbjct:    7 REDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQV 111

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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.930e-26
Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 0

Query:    5 DGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            DGR  +QIR L  +QGILNRADGS RF  GNTSVL A YGPA     + +K + A IEV +R + G  +  DAERE+ +RR+LEE +  +RYPR ++S+V+QV
Sbjct:    8 DGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQV 110

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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A1V9ZII6_9STRA (Exosome component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.810e-26
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 0

Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR   +IRPLA EQG+LNRADGS+RF  G TSVLA+  GPA AK  R +K   A +EV F+PE G +S  D E E++LR++ E +IL   +PR ++S+ +QV
Sbjct:    8 REDGRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQV 112

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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: W4FVM2_9STRA (RNase_PH domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FVM2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.960e-25
Identity = 50/105 (47.62%), Postives = 73/105 (69.52%), Query Frame = 0

Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR   +IRPL+ EQG+LNRADGSARF  G+TSV+A+  GPA AK+ R +K + A +EV F+ + G  +  D E E++LR++ E V+    +PR ++S+ +QV
Sbjct:   11 REDGRLVQEIRPLSCEQGLLNRADGSARFSHGSTSVVASVNGPAAAKNRRQEKVDAATLEVVFKSDKGAPTARDKEYEVILRQTFETVVYLENFPRAVISLTVQV 115

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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.490e-24
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 0

Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR   +IRPL+ EQG+LNRADGSARF  G TSVLA+  GPA AK  R +K + A +EV F+ E G  +  D E E +LR++ E ++    YPR ++SI +QV
Sbjct:    8 RGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQV 112

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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A8J4V0I1_9MYCE (RNase_PH domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V0I1_9MYCE)

HSP 1 Score: 101 bits (251), Expect = 4.040e-24
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 0

Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR  NQIRP+  EQG+LN+ADGSA+F Q  +SVLAA YGP   K+ R +K   + +EV F P  G SS  D E+E+L+R ++E VIL + +PR  +++VIQV
Sbjct:    6 RLDGRFDNQIRPIETEQGLLNKADGSAKFTQNKSSVLAAVYGPIEVKNPRKEKILKSVVEVTFTPGLGNSSYQDKEKELLIRNAVESVILTTLHPRTQITVVIQV 110

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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.090e-24
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 0

Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR+  +IRPLA EQG+LNRADGSARF  G TSV+A+  GPAPAK  R +    A ++V F+ E G+++  D E E++LR++ E +IL   +PR ++SI +QV
Sbjct:  504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQV 608

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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A151ZDL9_9MYCE (RNase_PH domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZDL9_9MYCE)

HSP 1 Score: 99.8 bits (247), Expect = 1.140e-23
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = 0

Query:    2 TRRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            TR DGR  NQIR    EQ +LN+ADGSARF Q  +SVLAA YGP   K++R QK   + IEV F P  G ++ +D E+E+L++ +LE +IL + +PR  +SI+ QV
Sbjct:    4 TRNDGRLNNQIRAFESEQSLLNKADGSARFTQNKSSVLAAVYGPIEVKNSRKQKILKSLIEVSFTPSVGNTTYLDKEKELLIKNALESIILTTLHPRTQISIIFQV 109

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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.040e-23
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 0

Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR   +IRPL+ EQG+LNRADGSARF  G+TSVLA+  GPA AK  R +K + A +EV F+ + G  +  D E E +L+++ + ++    YPR ++SI +QV
Sbjct:   10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQV 114

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot

BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FVT2_ECTSI	4.300e-48	78.30	RNase_PH domain-containing protein n=2 Tax=Ectocar...	[more]
A0A067CJ13_SAPPC	6.640e-27	55.24	Uncharacterized protein n=2 Tax=Saprolegnia TaxID=...	[more]
A0A835ZF16_9STRA	2.930e-26	53.40	Ribosomal protein S5 domain 2-type protein n=1 Tax...	[more]
A0A1V9ZII6_9STRA	3.810e-26	52.38	Exosome component Rrp46 n=1 Tax=Achlya hypogyna Ta...	[more]
W4FVM2_9STRA	6.960e-25	47.62	RNase_PH domain-containing protein n=2 Tax=Aphanom...	[more]
A0A485KL27_9STRA	3.490e-24	50.48	Aste57867_8748 protein n=1 Tax=Aphanomyces stellat...	[more]
A0A8J4V0I1_9MYCE	4.040e-24	51.43	RNase_PH domain-containing protein n=1 Tax=Polysph...	[more]
A0A1V9ZVY3_9STRA	6.090e-24	50.48	U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax...	[more]
A0A151ZDL9_9MYCE	1.140e-23	50.00	RNase_PH domain-containing protein n=1 Tax=Tieghem...	[more]
A0A024TBK6_9STRA	4.040e-23	47.62	Uncharacterized protein n=2 Tax=Aphanomyces TaxID=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 1..107 e-value: 5.6E-29 score: 103.2
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 11..107 e-value: 5.1E-14 score: 52.9
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 1..107
None	No IPR available	PANTHER	PTHR11953:SF1	EXOSOME COMPLEX COMPONENT RRP46	coord: 1..107
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 2..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig52870	contig	H-elongata_contig52870:6..326 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig52870.12608.1	mRNA_H-elongata_contig52870.12608.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig52870 6..326 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig52870.12608.1 ID=prot_H-elongata_contig52870.12608.1|Name=mRNA_H-elongata_contig52870.12608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MTRRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKS
ARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCL
VSIVIQV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027408	PNPase/RNase_PH_dom_sf
IPR001247	ExoRNase_PH_dom1
IPR020568	Ribosomal_S5_D2-typ_fold