prot_H-elongata_contig52866.12607.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52866.12607.1
Unique Nameprot_H-elongata_contig52866.12607.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length136
Homology
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.920e-30
Identity = 64/137 (46.72%), Postives = 92/137 (67.15%), Query Frame = 0
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 136
            L  + DADY +    RRSVS GVVM A GAI+WF + QK    +++++EYVA+A+M  E+ FLR+V  FM P  +   I ++EDNEGAI++AK+ +S+  + H+D++HH +R  +DE  V I +V S  QHAD L K
Sbjct:  230 LITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 366          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5KIL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL0_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 8.770e-30
Identity = 65/137 (47.45%), Postives = 92/137 (67.15%), Query Frame = 0
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 136
            L  + DADY +    RRSVS GVVM A GAI+WF + QK    +++++EYVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++AK+ +S+  + H+D++HH +R  +DE  V I +V S  QHAD L K
Sbjct:  911 LITFVDADYASVAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPVSNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 1047          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.150e-29
Identity = 65/137 (47.45%), Postives = 92/137 (67.15%), Query Frame = 0
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 136
            L  + DADY +    RRSVS GVVM A GAI+WF + QK    +++++EYVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++AK+ +S+  + H+D++HH +R  +DE  V I +V S  QHAD L K
Sbjct:  216 LITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 352          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.160e-29
Identity = 64/137 (46.72%), Postives = 92/137 (67.15%), Query Frame = 0
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 136
            L  + +ADY +    RRSVS GVVM A GAI+WF + QK    +++++EYVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++AK+ +S+  + H+D++HH +R  +DE  V I +V S  QHAD L K
Sbjct:  282 LITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTK 418          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.290e-29
Identity = 65/137 (47.45%), Postives = 91/137 (66.42%), Query Frame = 0
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 136
            L A+ DADY +    RRSVS GVVM A GAI+WF + Q     ++++SEYVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++AK+ +S   + H+D++HH +R  +DE  V + +V S  QHAD L K
Sbjct:  601 LIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISKSNSKHIDVRHHFLRQLVDEKEVELIHVASKYQHADFLTK 737          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5L5J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J6_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 8.410e-28
Identity = 63/137 (45.99%), Postives = 90/137 (65.69%), Query Frame = 0
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 136
            L A+ DADY +    RRSVS GVVM A GAI+WF + Q+    +++++EYVA+A+M   + FLRQV  FM P  +     +HEDNEGAI++AK+ +S+  + H+D++HH +R  +DE  V I +  S  QHAD L K
Sbjct:  415 LIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQECVTLSTTQAEYVAMADMGKVILFLRQVWRFMLPKELRPCSPLHEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVDIIHGASKYQHADFLTK 551          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5KKT4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT4_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.240e-27
Identity = 65/138 (47.10%), Postives = 92/138 (66.67%), Query Frame = 0
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNEL-RFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 136
            L A+ DADY +    RRSVS GVVM A GAI+WF + QK    +++++EYVA+A+M  E+  FLRQV  FM P  +   I ++EDNEG IK+AK+ +S+  + H++++HH +R  +DE  V I +V S  QHAD L K
Sbjct:  752 LIAFVDADYASRAAHRRSVSGGVVMYAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGMEMILFLRQVWRFMLPKELRPCIPLYEDNEGTIKIAKHPISNSNSKHIEVRHHFLRQLVDEKEVEIIHVASKYQHADFLTK 889          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.910e-27
Identity = 63/137 (45.99%), Postives = 90/137 (65.69%), Query Frame = 0
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPT-IDVTIKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 136
            L  +  ADY +    RRS S GVVM A GAI+WF + QK    +++++EYVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++AK+ +S+  + H+D++HH +R  +DE  V I +V S  QHAD L K
Sbjct:  463 LITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTK 599          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.680e-27
Identity = 55/137 (40.15%), Postives = 88/137 (64.23%), Query Frame = 0
Query:    1 LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPTIDVT-IKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 136
            +  + DADY +    RRSVS G+VM   G ++WF R QK    +++E+EYVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++A N +++  + H+D++HH +R+ ++   + I  V +  QHAD L K
Sbjct:  167 MQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTK 303          
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.320e-27
Identity = 56/134 (41.79%), Postives = 87/134 (64.93%), Query Frame = 0
Query:    4 WTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEYVALAEMVNELRFLRQVKAFMTPTIDVT-IKIHEDNEGAIKMAKNRLSSRRTGHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK 136
            + DAD+ +    RRSVS  +V +A   + W  R QK  + ++SE+EY+A+ + V E  F+  +  F+ P++    I + EDNEGAI +A+N LSS R+ H+D++HH +R+  +EGV+ + +V S EQHADIL K
Sbjct:  106 YVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTK 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52866.12607.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWK8_9PHAE2.920e-3046.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KIL0_9PHAE8.770e-3047.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JR13_9PHAE1.150e-2947.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRZ9_9PHAE1.160e-2946.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWA6_9PHAE2.290e-2947.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L5J6_9PHAE8.410e-2845.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKT4_9PHAE1.240e-2747.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K307_9PHAE1.910e-2745.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KP70_9PHAE4.680e-2740.15Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCG6_9PHAE5.320e-2741.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 1..116
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52866contigH-elongata_contig52866:1469..1876 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52866.12607.1mRNA_H-elongata_contig52866.12607.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52866 1469..1876 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52866.12607.1 ID=prot_H-elongata_contig52866.12607.1|Name=mRNA_H-elongata_contig52866.12607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
LSAWTDADYDTCPDTRRSVSEGVVMMACGAISWFLRVQKVTAAASSESEY
VALAEMVNELRFLRQVKAFMTPTIDVTIKIHEDNEGAIKMAKNRLSSRRT
GHVDIKHHIVRDAIDEGVVHIEYVRSGEQHADILMK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like