prot_H-elongata_contig52621.12569.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52621.12569.1
Unique Nameprot_H-elongata_contig52621.12569.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length186
Homology
BLAST of mRNA_H-elongata_contig52621.12569.1 vs. uniprot
Match: D7FSX8_ECTSI (Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.230e-29
Identity = 85/201 (42.29%), Postives = 110/201 (54.73%), Query Frame = 0
Query:    2 LSKVDVEVDGELLKNLKDLGLALAHDVALNLHNGQPVSLHLECDAHDTSVIHLKARCLLSLVPGLAS---ASSASLALPPPASVAKRSSWSPSATGGRG-LALVELLRKVCLEWKQGEATLDGPLALQGSLAAASVLTGASLKLEWNPPPSNQEETITFKVHTGDGS------------YGPLEVVTDPKEPVFVLKDRMI 186
            L +V+VEVD +L+  L+   L LAHDVA+  H GQ V LHLECD H TS+ HLKA CLL LVP L      SS   AL P      R + +  A+G +  LALV L++ V LE  +   TLD   +   SL A  +  GA L L+W  PP+  +  + F V  G+ +            +GPLEV+ D KEPV  LK RM+
Sbjct: 1210 LVRVEVEVDDDLVDTLRSHSLPLAHDVAVATHEGQRVLLHLECDVHATSIPHLKAFCLLGLVPALKENTIPSSQIQALLPXXXXXXRGTAAAPASGAKEELALVGLVKTVRLENTKSGNTLDES-STGASLFATRISEGAQLMLQWGAPPATGKALVKFYVRVGNSTATARDPTRSGSTFGPLEVIADLKEPVSALKARMV 1409          
BLAST of mRNA_H-elongata_contig52621.12569.1 vs. uniprot
Match: A0A6H5JBH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.890e-25
Identity = 72/169 (42.60%), Postives = 96/169 (56.80%), Query Frame = 0
Query:    2 LSKVDVEVDGELLKNLKDLGLALAHDVALNLHNGQPVSLHLECDAHDTSVIHLKARCLLSLVPGLAS----ASSASLALPPPASVAKRSSWSPSATGGRGLALVELLRKVCLEWKQGEATLDGPLALQGSLAAASVLTGASLKLEWNPPPSNQEETITFKVHTGDGSYG 166
            L +V+VEVD +L++ L+  GL LAHDVA+  H GQ V L+LECD H TSV HLKA CLL LVP L      +S     LPP    A+ ++ +P++     LALV L++ V LE  +    LD   +   SL AA V  GA L L+W  PP+  +  + F V  G+   G
Sbjct:  279 LVRVEVEVDDDLVETLRSHGLPLAHDVAVATHEGQRVLLNLECDVHATSVPHLKALCLLGLVPALKENAVPSSQIQALLPPXXXXARGTATAPASGAKEELALVGLVKTVRLEDTKSGNALDES-STGASLFAARVTDGAQLMLQWGAPPATGKALVKFYVRVGESFCG 446          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52621.12569.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSX8_ECTSI2.230e-2942.29Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=... [more]
A0A6H5JBH2_9PHAE1.890e-2542.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52621contigH-elongata_contig52621:118..1530 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52621.12569.1mRNA_H-elongata_contig52621.12569.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52621 118..1530 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52621.12569.1 ID=prot_H-elongata_contig52621.12569.1|Name=mRNA_H-elongata_contig52621.12569.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MLSKVDVEVDGELLKNLKDLGLALAHDVALNLHNGQPVSLHLECDAHDTS
VIHLKARCLLSLVPGLASASSASLALPPPASVAKRSSWSPSATGGRGLAL
VELLRKVCLEWKQGEATLDGPLALQGSLAAASVLTGASLKLEWNPPPSNQ
EETITFKVHTGDGSYGPLEVVTDPKEPVFVLKDRMI
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