prot_H-elongata_contig52602.12565.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52602.12565.1
Unique Nameprot_H-elongata_contig52602.12565.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length73
Homology
BLAST of mRNA_H-elongata_contig52602.12565.1 vs. uniprot
Match: A0A6H5L429_9PHAE (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L429_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 8.550e-42
Identity = 64/71 (90.14%), Postives = 71/71 (100.00%), Query Frame = 0
Query:    1 QDCIKTDLRGKTSSLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIMRK 71
            +DC+KT++RGKTS+LQQLYIRGNQIVFCIVP+MLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAI+RK
Sbjct:   40 KDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK 110          
BLAST of mRNA_H-elongata_contig52602.12565.1 vs. uniprot
Match: D7FT20_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT20_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 4.630e-39
Identity = 63/71 (88.73%), Postives = 70/71 (98.59%), Query Frame = 0
Query:    1 QDCIKTDLRGKTSSLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIMRK 71
            +DC+KT++RGKTS+LQQLYIRGNQIVFCIVP+MLRNAPMFARIKQ RKYKGHPPVLASEGAKGQRAAI+RK
Sbjct:   40 KDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQGRKYKGHPPVLASEGAKGQRAAIIRK 110          
BLAST of mRNA_H-elongata_contig52602.12565.1 vs. uniprot
Match: A0A835YVP5_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.850e-26
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 0
Query:    1 QDCIKTDLRGKTSSLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIMRK 71
            +D +KTD+RGKTS+L ++YIRG+QIV  IVPDMLR A MF RI  WRKYKG+PP LAS    GQRAAI+RK
Sbjct:   50 KDILKTDVRGKTSTLSKMYIRGSQIVLVIVPDMLRRAAMFKRIVMWRKYKGNPPSLASSANTGQRAAILRK 120          
BLAST of mRNA_H-elongata_contig52602.12565.1 vs. uniprot
Match: A0A6U1QDM6_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QDM6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.130e-20
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 0
Query:    2 DCIKTDLRGKTSSLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIMRK 71
            D  KT   GK S + QLY+RG+QI F +VPD L+  PMF RI+ WRKYKG+PP L S   +GQ AAI+RK
Sbjct:   51 DVTKTTPMGKISKVDQLYVRGSQISFVVVPDTLQKGPMFKRIQMWRKYKGNPPSLGSVVPRGQAAAIIRK 120          
BLAST of mRNA_H-elongata_contig52602.12565.1 vs. uniprot
Match: F0W7K3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7K3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.640e-17
Identity = 35/78 (44.87%), Postives = 55/78 (70.51%), Query Frame = 0
Query:    1 QDCIKTDLRGKTSSLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPVLAS-----EGAKGQRAAIMRKGK 73
            ++ ++TD+ G T+ ++ +Y+RG+QI+F + PDML++APMF R+K W+K+KG  P L        G +GQ AAI+RK K
Sbjct:   50 KEAMRTDINGNTTHVELVYVRGSQILFIVFPDMLKHAPMFKRVKLWKKHKGVIPSLGQGGPGGAGPRGQAAAIIRKAK 127          
BLAST of mRNA_H-elongata_contig52602.12565.1 vs. uniprot
Match: I2CSB6_NANGC (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSB6_NANGC)

HSP 1 Score: 77.4 bits (189), Expect = 1.510e-16
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 0
Query:    1 QDCIKTDLRGKTSSLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIMRK 71
            +D  KT++ GK S ++ +YI+G+Q+ F I+PDML+ APMF RIK W+KY G+ P L + G +GQ A I +K
Sbjct:   50 RDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVWKKYHGNVPELGA-GVRGQAAVISQK 119          
BLAST of mRNA_H-elongata_contig52602.12565.1 vs. uniprot
Match: A0A7S2CKP8_9STRA (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CKP8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.770e-16
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 0
Query:    4 IKTDLRGKTSSLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIMRK 71
            +   + G  ++L  ++IRG+QIVF I P+ML+ APMF RIK W+K+KGHPP    + A+GQ AAI+RK
Sbjct:   37 VTNAVSGAVTNLDYVFIRGSQIVFIIFPNMLKLAPMFRRIKIWKKHKGHPPA-GGDAARGQAAAIIRK 103          
BLAST of mRNA_H-elongata_contig52602.12565.1 vs. uniprot
Match: D0NPB0_PHYIT (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Peronosporaceae TaxID=4777 RepID=D0NPB0_PHYIT)

HSP 1 Score: 76.6 bits (187), Expect = 3.840e-16
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 0
Query:    1 QDCIKTDLRGKTSSLQQLYIRGNQIVFCIVPDM----------LRNAPMFARIKQWRKYKGHPPVLASEGA-----KGQRAAIMRK 71
            +D ++TD+ G TS ++Q+Y+RG+QI+F + PD+          L++APMF R+K W+K+KG  P L   G      +GQ AAI+RK
Sbjct:   50 KDAVRTDINGNTSQVEQVYLRGSQILFIVFPDIYPLQPDIAVTLKHAPMFKRVKMWKKHKGSIPTLGQGGVGGGAPRGQAAAIIRK 135          
BLAST of mRNA_H-elongata_contig52602.12565.1 vs. uniprot
Match: A0A7S3K1R1_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1R1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.890e-15
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    1 QDCIKTDLRGKTSSLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIMRK 71
            +D  KT   GK S ++ ++IRG+QI+F + P ML+ APMF R++ WRK++G+  +   E A+GQ AAI+RK
Sbjct:   67 KDVTKTSAEGKKSQIEHIFIRGSQILFFVFPTMLKKAPMFKRVRTWRKHRGN--ISKGEEARGQAAAIIRK 135          
BLAST of mRNA_H-elongata_contig52602.12565.1 vs. uniprot
Match: G4ZR13_PHYSP (Small nuclear ribonucleoprotein Sm D3 n=11 Tax=Phytophthora TaxID=4783 RepID=G4ZR13_PHYSP)

HSP 1 Score: 73.6 bits (179), Expect = 6.610e-15
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 0
Query:    1 QDCIKTDLRGKTSSLQQLYIRGNQIVFCIVPDM-------------LRNAPMFARIKQWRKYKGHPPVLASEGA-----KGQRAAIMRK 71
            +D ++TD+ G T+ ++Q+Y+RG+QI+F + PD+             L++APMF R+K W+K+KG  P L   G      +GQ AAI+RK
Sbjct:   50 KDAVRTDINGNTTHVEQVYLRGSQILFIVFPDIYPLQPHTCGCIFTLKHAPMFKRVKMWKKHKGAIPTLGQGGVGGGAPRGQAAAIIRK 138          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52602.12565.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L429_9PHAE8.550e-4290.14Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
D7FT20_ECTSI4.630e-3988.73Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A835YVP5_9STRA1.850e-2667.61Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A6U1QDM6_9STRA5.130e-2057.14Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
F0W7K3_9STRA2.640e-1744.87Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albu... [more]
I2CSB6_NANGC1.510e-1649.30Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A7S2CKP8_9STRA3.770e-1651.47Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Flor... [more]
D0NPB0_PHYIT3.840e-1641.86Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Pero... [more]
A0A7S3K1R1_9STRA1.890e-1546.48Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
G4ZR13_PHYSP6.610e-1539.33Small nuclear ribonucleoprotein Sm D3 n=11 Tax=Phy... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..41
e-value: 4.1E-9
score: 37.8
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 2..72
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 2..72
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 2..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52602contigH-elongata_contig52602:1725..1943 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52602.12565.1mRNA_H-elongata_contig52602.12565.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52602 1725..1943 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52602.12565.1 ID=prot_H-elongata_contig52602.12565.1|Name=mRNA_H-elongata_contig52602.12565.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
QDCIKTDLRGKTSSLQQLYIRGNQIVFCIVPDMLRNAPMFARIKQWRKYK
GHPPVLASEGAKGQRAAIMRKGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf