prot_H-elongata_contig52599.12564.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52599.12564.1
Unique Nameprot_H-elongata_contig52599.12564.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length298
Homology
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A6H5KZU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU7_9PHAE)

HSP 1 Score: 407 bits (1046), Expect = 2.130e-131
Identity = 202/297 (68.01%), Postives = 236/297 (79.46%), Query Frame = 0
Query:    1 MATPDGWWNRALRLWRVGALANRDGKALMGTGGADDPLVVDVWGADTKATRGSH-ASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGSH 296
            MA+ DGWWNR++R W   A   R  + ++GTG A  PLVV+    D     G   ASEEKELQEKVD EPVP TIAALKNHH YVLGK LLK E LRP AKAAGLVKG KV+LK+DV  L+GASRWK D L+VK SEL KP K+ TKKGEK+GEGT KLYG+WQTEPW P+ AVDGKVPKNEYGN+EFF+CSPA LP GT H++G+QI R+A++LGVDYAPAL GFETK GR+VPVLDGIIVCKEQ QMLRDAH  W+Q  LE++ K R +R++RRWRTLF GV+ GA++L+EYGSH
Sbjct:  743 MASADGWWNRSMRKWGASA-DRRSRRKVIGTGAASSPLVVEGQRDDEANEDGDQGASEEKELQEKVDKEPVPNTIAALKNHHKYVLGKKLLKFEALRPGAKAAGLVKGSKVYLKTDVATLRGASRWKKDALQVKKSELDKPVKLATKKGEKEGEGTSKLYGDWQTEPWAPEAAVDGKVPKNEYGNLEFFDCSPAFLPTGTAHLRGEQIGRLAAKLGVDYAPALTGFETKVGRQVPVLDGIIVCKEQSQMLRDAHMTWQQMQLEKQVKVRGERVLRRWRTLFKGVLLGAQLLEEYGSH 1038          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: D8LJY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY2_ECTSI)

HSP 1 Score: 397 bits (1020), Expect = 5.330e-128
Identity = 201/299 (67.22%), Postives = 235/299 (78.60%), Query Frame = 0
Query:    1 MATPDGWWNRALRLWRVGALANRDGKALMGTGGADD-PLVVDVWGAD-TKATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGSHN 297
            MA+ DGWWNR+LR W  GA A+R              PLVV+  G D         A EEKELQEKVD+EP+P TIAALKNHH YVLGK LLK E LRP AKAAGLVKG KV+LK+DV  L+GASRWK D L+VK SEL KP K+ TKKGEK+G+GT KLYG+WQTEPW P+ AVDGKVPKN+YGNVEFF+CSPA LP GT H++G+QI R+A++LGVDYAPAL GFETK GR+VPVLDGIIVCKEQ QMLRDAH  W+QT LE++ KAR QR++RRWRTLF GV+ GA++L+EYGSH+
Sbjct:  695 MASADGWWNRSLRKW--GASAHRXXXXXXXXXXXXXXPLVVEGHGDDEANEDDDQGAIEEKELQEKVDNEPIPNTIAALKNHHKYVLGKKLLKFEALRPGAKAAGLVKGSKVYLKTDVATLRGASRWKKDALQVKKSELEKPVKLTTKKGEKEGDGTSKLYGDWQTEPWAPEAAVDGKVPKNDYGNVEFFDCSPAFLPTGTAHLRGEQIGRLAAKLGVDYAPALTGFETKVGRQVPVLDGIIVCKEQSQMLRDAHMTWQQTQLEKQVKARRQRVLRRWRTLFKGVLLGAQLLEEYGSHD 991          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: UPI0018D989F2 (DNA repair protein complementing XP-C cells homolog n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D989F2)

HSP 1 Score: 165 bits (418), Expect = 1.400e-42
Identity = 98/239 (41.00%), Postives = 146/239 (61.09%), Query Frame = 0
Query:   57 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPE-AKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDG--EGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVR---RWRTLFLGVMEGARI 289
            E++ LQ+++  +P+P +I+  KNHH+YVL + LLK E L PE A   G  +G  V+ ++ V  L     WK  GL ++  E  KP K++  +  K+   E    LYG+WQTE ++P  AVDGKVP+NEYGNVE F+  P++LP GT H+Q   + RVA ++GVD APA+VG++   G   PV DG +VCKE   +L D    WE+   E++ K  +++ +R    W+TL  G++   R+
Sbjct:  495 EDEHLQKQLQEKPMPTSISEFKNHHLYVLKRHLLKFEALYPESATILGYCRGEAVYSRNCVHTLHTKETWKKQGLAIQHGE--KPYKMVKARPRKNKSHEPLLPLYGQWQTELYIPPAAVDGKVPRNEYGNVELFQ--PSMLPMGTVHLQIPGLHRVAQKIGVDCAPAMVGWDYHGGFCHPVFDGFVVCKEFTDILLDN---WEKDNAEREHKLNQKKRIRAEKNWKTLVTGLLIRERL 726          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A7R9I670_9NEOP (Hypothetical protein n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9I670_9NEOP)

HSP 1 Score: 158 bits (399), Expect = 1.530e-42
Identity = 94/260 (36.15%), Postives = 144/260 (55.38%), Query Frame = 0
Query:   38 LVVDVWGADTKATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRP-EAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQ---RLVRRWRTLFLGVMEGARILQEY 293
            +  D W    +  RGS    +KE +E ++ +     + + KNH +YVL K LLK E + P +A   G ++G +VF +  V  L     W  +   V+  E  KP K++  + + D     +++GEWQ E ++P PAVDGKVP+N YGNVE F+  P +LP GT H+Q + ++RVA +L +D APA+VGF+   G   P  DG +VC+E   +L DA   W Q L E + + +++   R+   WR L  G++   R+   Y
Sbjct:   39 VAADWWEHSLRPWRGSWTPMDKEEEEDLEQQLHDRPLPSYKNHPLYVLRKDLLKFEAIYPPDAPTLGFIRGQEVFARECVKNLHSRETWVKEAKVVRLGE--KPYKIVKARPKYD-----RVFGEWQVEDYIPPPAVDGKVPRNAYGNVELFK--PCMLPKGTVHLQINGLNRVAKKLNIDCAPAVVGFDFHCGGSHPTYDGFVVCEEFVDILLDA---WNQELEESEKRRQDKHDKRVYGNWRRLIKGLLIRERLQARY 286          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A2B4SLG3_STYPI (DNA repair protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SLG3_STYPI)

HSP 1 Score: 166 bits (419), Expect = 2.010e-42
Identity = 97/248 (39.11%), Postives = 148/248 (59.68%), Query Frame = 0
Query:   57 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAA-GLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKD------GEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGSHN 297
            E+  L++++  +P+P +I   KNH +YVL + LLK EGL PE  A  G  +G  V+ +  V  L    +W  + L VK  E  KP K++  + +++         T  L+G WQTE + P PA DGKVP+NEYGNVE F+  P +LP GT+H+Q + I RVA +LG+D A A++GF+   G   PV+DG++VC+E  Q L DA    EQ   ++KA+ RE+R++  W+ L   ++   R+ + Y + +
Sbjct:  771 EDSHLEDQLLDKPLPTSITEYKNHPLYVLKRHLLKFEGLYPETAAILGYCRGEAVYSRECVHLLHTREKWLNEALVVKQGE--KPYKIVKGRPKRNQPIHERDSVTIDLFGRWQTEKYKPPPAKDGKVPRNEYGNVELFQ--PCMLPPGTKHIQINGIQRVAKKLGIDCAQAVIGFDFHCGFSHPVIDGVVVCEEYEQTLLDAWHEEEQQAEKKKAEKREKRMLANWKLLTRSLLIRERLKKRYDTED 1014          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A024GVV3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GVV3_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.190e-42
Identity = 93/245 (37.96%), Postives = 138/245 (56.33%), Query Frame = 0
Query:   57 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVI-----TKKGEKDGEGTG-KLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGS 295
            E+KELQE  D+E +P +I   + HH Y L + L + E L P  +  G+ KG +V+L+  + +L+ A  W   G  +K  E  +P K +     T+ G  D +     LYG WQTE + P   +DG +PKNE+GN+E +  S   LP G  H++   I+  AS++G+DYAPALVGFETK G   P  DGIIV     Q+L DAH   EQ  +E   +  +  + +RW+ L   ++  +R+ ++YG 
Sbjct:   23 EKKELQELADAERMPTSIEGFRRHHRYCLERHLGRLEVLYPR-QVIGIFKGQRVYLRCHIQKLQSARHWLRQGRVIKEDEKLQPYKKLNRNKDTRNGCDDRQSRDIALYGGWQTEDFAPSIVMDGILPKNEHGNIELW--SDKHLPVGAAHLRMPHITAAASKVGIDYAPALVGFETKNGISYPKFDGIIVALSHKQLLIDAHAHLEQRKIEHAIEQNQNLIHKRWKRLVQRMLIRSRLEKDYGK 264          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: UPI001BB19790 (DNA repair protein complementing XP-C cells homolog isoform X1 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB19790)

HSP 1 Score: 166 bits (419), Expect = 2.200e-42
Identity = 100/274 (36.50%), Postives = 157/274 (57.30%), Query Frame = 0
Query:   40 VDVWGADT----KATRGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAA-GLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVIT-----KKGE---KDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVR---RWRTLFLGVMEGARILQEYGSHN 297
            VD W  +T    ++ +     E+ ++Q  + S+P+P ++A  KNH +Y L + LLK E L PE+ A  G  KG  V+ +  V  L     W  +G  ++ +E  KP K++      KKG    K  E T  ++GEWQ E ++P PAVDGKVP+NEYGNVE F+  P +LPAGT H++   +++VA +L +D APA++G++   G   PV+DG +VC+E  ++L     AWE+   EQ+ K +E+R  R    W+     ++   R+ + YG ++
Sbjct: 1349 VDEWWEETLKPYQSNKDRDRKEDLDVQSNLTSKPLPTSVAEYKNHPLYALKRHLLKFEALYPESAAVIGYCKGEAVYSRECVHTLHTRETWMKEGKAIRINE--KPYKMVKPRPKWKKGIGMIKTEESTLGIFGEWQVEDYIPPPAVDGKVPRNEYGNVELFK--PTMLPAGTVHLKIPGLNKVARKLDIDCAPAMMGWDFHSGFNHPVMDGFVVCEEHAEVLV---AAWEEDRAEQEKKEKEKREARAMNHWKLFIKSLLIRERLKERYGKND 1615          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: UPI00077A79C6 (DNA repair protein complementing XP-C cells homolog n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A79C6)

HSP 1 Score: 159 bits (402), Expect = 1.290e-41
Identity = 95/246 (38.62%), Postives = 145/246 (58.94%), Query Frame = 0
Query:   57 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAA-GLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKD------GEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGS 295
            E+ +L++K+  +P+P +I   KNH +YVL + LLK E + PE  A  G  +G  ++ +  V  L    +W  + L VK  E  K  KV+  + +++         T  L+G WQTE + P PA DGKVP+NEYGNVE F   P +LP GT+H+Q + I RVA +LG+D A A+VGF+   G   PV+DG++VC+E  Q+L DA    E+    +KA+ RE+R++  W+ L   ++   R+ + Y +
Sbjct:  169 EDSQLEDKLLEKPLPTSITEFKNHPLYVLKRHLLKFEAIYPETAAILGYCRGEAIYSRDCVHLLHTREKWLNEALVVKQGE--KAYKVVKGRPKRNQPIHERDSVTIDLFGRWQTERYKPPPAKDGKVPRNEYGNVELF--LPCMLPPGTKHIQINGIQRVAKKLGIDCAQAVVGFDFHCGFSHPVIDGVVVCQEFEQVLLDAWREEEELAERRKAEKREKRMLANWKLLTRSLLIRERLKKRYDT 410          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A6G0WLM4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLM4_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.410e-41
Identity = 94/264 (35.61%), Postives = 142/264 (53.79%), Query Frame = 0
Query:   52 GSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGE---------------------KDGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYG 294
            G +A +  ++ EK+   P+P ++A  KNH  Y L + L  +E + P  K  GL KG  VF +  V  L  A RW   G  V  SE   P K + K+ +                        E T  LYG+WQTE +V    VDG +PKNE+GN+E +  S A LP G+ H++  +  +VA++LG+D+APALVG+E+K GR VP+ DGI+VC     M++DAH+  E + +E+    +++ + +RW      ++   R+  EYG
Sbjct:  354 GKYADDPVDVDEKL---PMPTSVAGFKNHSQYCLEQHLGLYEWIHPR-KPVGLFKGLPVFDRQSVQALHSAHRWLRQGRVVLASERDNPCKKVPKRKQPVRPTENFANPTPFSVATAVASADESTISLYGQWQTEAFVAPQIVDGVIPKNEHGNIEIW--SDACLPIGSAHIRLPRAKQVATKLGIDFAPALVGWESKAGRSVPIFDGIVVCDHFVDMIQDAHSELEHSTVEKALAQKKKEIAKRWGIFVKKLLLRKRLRDEYG 611          
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Match: A0A553N867_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553N867_TIGCA)

HSP 1 Score: 161 bits (408), Expect = 3.250e-41
Identity = 93/246 (37.80%), Postives = 148/246 (60.16%), Query Frame = 0
Query:   57 EEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRP-EAKAAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEKDGEGTG--------KLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTEHVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLRDAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEY 293
            E++++ + + S P+P T++A K+H +Y L + LLK+E + P      G +KG  ++ +  V  L G + W  +G  V+   +G+ +  + K G K  + T         +L+G+WQTE +VP PAVDGKVP+NEYGNVE F+  P +LP GT H+    ISR+A +L +D APA++G+++  G   P+LDG IVC+E   +L DA    E+  L++  + RE+R++  WR L  G++   RI  +Y
Sbjct:  516 EDQQIDQALQSMPIPTTVSAFKDHPLYALPRHLLKYEAIYPPNPMPLGYLKGEPIYARECVHHLNGRTNWLKEGRVVR---IGEESYKVVKGGPKWDKMTSSVVKGPPLELFGKWQTEVYVPPPAVDGKVPRNEYGNVELFQ--PWMLPKGTVHIPIKGISRLAYKLKIDCAPAMMGWDSTCGWPKPILDGFIVCEEYQDILLDAWNTEEEEKLKRAEEKREKRVLDNWRKLVKGMLIVQRIKLKY 756          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52599.12564.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZU7_9PHAE2.130e-13168.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJY2_ECTSI5.330e-12867.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0018D989F21.400e-4241.00DNA repair protein complementing XP-C cells homolo... [more]
A0A7R9I670_9NEOP1.530e-4236.15Hypothetical protein n=1 Tax=Timema bartmani TaxID... [more]
A0A2B4SLG3_STYPI2.010e-4239.11DNA repair protein n=1 Tax=Stylophora pistillata T... [more]
A0A024GVV3_9STRA2.190e-4237.96Uncharacterized protein (Fragment) n=1 Tax=Albugo ... [more]
UPI001BB197902.200e-4236.50DNA repair protein complementing XP-C cells homolo... [more]
UPI00077A79C61.290e-4138.62DNA repair protein complementing XP-C cells homolo... [more]
A0A6G0WLM4_9STRA1.410e-4135.61Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A553N867_TIGCA3.250e-4137.80Uncharacterized protein n=1 Tax=Tigriopus californ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018328Rad4 beta-hairpin domain 3SMARTSM01032BHD_3_2coord: 177..253
e-value: 7.2E-28
score: 108.6
IPR018328Rad4 beta-hairpin domain 3PFAMPF10405BHD_3coord: 177..251
e-value: 4.7E-23
score: 81.4
IPR018327Rad4 beta-hairpin domain 2SMARTSM01031BHD_2_2coord: 119..170
e-value: 1.2E-4
score: 31.5
IPR018326Rad4 beta-hairpin domain 1SMARTSM01030BHD_1_2coord: 66..117
e-value: 4.8E-10
score: 49.4
IPR018326Rad4 beta-hairpin domain 1PFAMPF10403BHD_1coord: 67..116
e-value: 9.9E-12
score: 44.5
IPR042488Rad4, beta-hairpin domain 3 superfamilyGENE3D3.30.70.2460coord: 183..258
e-value: 4.6E-16
score: 60.4
IPR004583DNA repair protein Rad4PANTHERPTHR12135DNA REPAIR PROTEIN XP-C / RAD4coord: 7..294

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52599contigH-elongata_contig52599:199..3585 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52599.12564.1mRNA_H-elongata_contig52599.12564.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52599 151..3998 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52599.12564.1 ID=prot_H-elongata_contig52599.12564.1|Name=mRNA_H-elongata_contig52599.12564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
MATPDGWWNRALRLWRVGALANRDGKALMGTGGADDPLVVDVWGADTKAT
RGSHASEEKELQEKVDSEPVPGTIAALKNHHMYVLGKSLLKHEGLRPEAK
AAGLVKGCKVFLKSDVGRLKGASRWKLDGLKVKCSELGKPAKVITKKGEK
DGEGTGKLYGEWQTEPWVPKPAVDGKVPKNEYGNVEFFECSPALLPAGTE
HVQGDQISRVASRLGVDYAPALVGFETKQGRRVPVLDGIIVCKEQCQMLR
DAHTAWEQTLLEQKAKAREQRLVRRWRTLFLGVMEGARILQEYGSHN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018328Rad4_beta-hairpin_dom3
IPR018327BHD_2
IPR018326Rad4_beta-hairpin_dom1
IPR042488Rad4_BHD3_sf
IPR004583DNA_repair_Rad4