prot_H-elongata_contig5248.12551.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5248.12551.1
Unique Nameprot_H-elongata_contig5248.12551.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
BLAST of mRNA_H-elongata_contig5248.12551.1 vs. uniprot
Match: A0A6H5L2D0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.230e-9
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0
Query:   33 EFLYLGGNVNHNDILSIEVNQRIRNAWCSFRKCTLELYDRPSVPLELKLRMLKTEVFETIL 93
            EF YLG  V  +  LS ++NQR R AW   RK   EL+DRP+ P  LK+R+LK E  E +L
Sbjct:  245 EFRYLGRRVREDIELSQDINQRSRAAWACLRKYARELFDRPTAPWGLKIRLLKAEAMEALL 305          
BLAST of mRNA_H-elongata_contig5248.12551.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.910e-8
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 0
Query:   30 QTNEFLYLGGNVNHNDILSIEVNQRIRNAWCSFRKCTLELYDRPSVPLELKLRMLKTEVFETILCGCATWS 100
            QT+ F+YL   ++ +     E+  R   AW  +R+ +  +YDR     +LK+R+L++EV ET+L GCA+WS
Sbjct:   24 QTDRFVYLERIISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQSEVVETLLYGCASWS 94          
BLAST of mRNA_H-elongata_contig5248.12551.1 vs. uniprot
Match: A0A6H5L6J0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 8.060e-8
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 0
Query:   28 GNQTNEFLYLGGNVNHNDILSIEVNQRIRNAWCSFRKCTLELYDRPSVPLELKLRMLKTEVFETILCGCATWS 100
            G  T+ F+YLG  ++ +     E+  R   AW  +R+ +  +YDR     +LK+R+++TEV ET+L  CA+WS
Sbjct:  353 GLMTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASIYDRLRANRQLKIRLVQTEVVETLLYWCASWS 425          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5248.12551.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L2D0_9PHAE5.230e-949.18Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCQ1_9PHAE5.910e-838.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6J0_9PHAE8.060e-836.99Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5248contigH-elongata_contig5248:46..351 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5248.12551.1mRNA_H-elongata_contig5248.12551.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5248 46..351 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5248.12551.1 ID=prot_H-elongata_contig5248.12551.1|Name=mRNA_H-elongata_contig5248.12551.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
RFSAACHNILLRHGPARPQQYCRGSHLGNQTNEFLYLGGNVNHNDILSIE
VNQRIRNAWCSFRKCTLELYDRPSVPLELKLRMLKTEVFETILCGCATWS
PR
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