prot_H-elongata_contig52390.12548.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52390.12548.1
Unique Nameprot_H-elongata_contig52390.12548.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length134
Homology
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BLAST of mRNA_H-elongata_contig52390.12548.1 vs. uniprot
Match: D7G443_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G443_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 5.930e-19
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0 
Query:   81 VVFSWSFLGFEAHFSIRGRRRRFLWPFSSLAFVAQLYLLIFIASVAIWSFGTWA 134
            +VF+WSFLGFE HFSIRGR+RRFL PFSSL+FVA LYLL+F  S+AIW FGTWA
Sbjct:    1 MVFAWSFLGFETHFSIRGRKRRFLRPFSSLSFVALLYLLLFSMSMAIWIFGTWA 54
[Close]
BLAST of mRNA_H-elongata_contig52390.12548.1 vs. uniprot
Match: A0A7S3HFS1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFS1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.460e-12
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 0 
Query:   20 KKWASFVLLGPLLPTMFAIILIVIGGAIVKADNIDDNADIACGYPIDIFIKAAIGNSYFLLVVFSWSFLGFEAHFSIR--GRRRRFLWPFSSLAFVAQLYLLIFIASVAIWSFGT 132
            KKWA  VL+GP LP +FA+I+IV G  ++            CGY +D FI AA+   Y  L+VFSW ++G     S+   G     L PF SL ++   Y ++ + S  +W  G+
Sbjct:   31 KKWAGLVLIGPFLPAVFALIVIVCGQLVLNTWTG------TCGYALDSFISAAVAVCYLFLMVFSWVYVGDTVILSLPALGIELTLLTPFKSLKYIVFYYFVVAVVSFIVWLVGS 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52390.12548.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G443_ECTSI5.930e-1977.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3HFS1_9STRA2.460e-1236.52Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..88
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..131
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 132..134
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 48..66
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..47
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 89..108
NoneNo IPR availableTMHMMTMhelixcoord: 67..89
NoneNo IPR availableTMHMMTMhelixcoord: 25..47
NoneNo IPR availableTMHMMTMhelixcoord: 110..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52390contigH-elongata_contig52390:3..1418 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52390.12548.1mRNA_H-elongata_contig52390.12548.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52390 3..1418 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52390.12548.1 ID=prot_H-elongata_contig52390.12548.1|Name=mRNA_H-elongata_contig52390.12548.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MSDESQSPAVVLASCSVTEKKWASFVLLGPLLPTMFAIILIVIGGAIVKA
DNIDDNADIACGYPIDIFIKAAIGNSYFLLVVFSWSFLGFEAHFSIRGRR
RRFLWPFSSLAFVAQLYLLIFIASVAIWSFGTWA
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