prot_H-elongata_contig52377.12543.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52377.12543.1
Unique Nameprot_H-elongata_contig52377.12543.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length81
Homology
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.170e-41
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 79
            P   +DDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE+VSAKYDGTLRNQNNQV
Sbjct:  819 PHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQV 897          
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.170e-41
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 79
            P   +DDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE+VSAKYDGTLRNQNNQV
Sbjct:  830 PHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQV 908          
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 9.000e-40
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQ---EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 79
            P   +DDLGPESRGFVENSYLRGLSPQ   EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE+VSAKYDGTLRNQNNQV
Sbjct:  828 PHFAKDDLGPESRGFVENSYLRGLSPQARAEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEAVSAKYDGTLRNQNNQV 909          
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A7S2W8X2_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W8X2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 7.850e-39
Identity = 65/79 (82.28%), Postives = 69/79 (87.34%), Query Frame = 0
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 79
            P   +DDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTA KTAETGYIQRRLVKA+E+V A+YDGTLR     V
Sbjct:  112 PHFSKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGNV 190          
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: B8XGM3_9NEOP (DNA-directed RNA polymerase (Fragment) n=2 Tax=Pthirus TaxID=121227 RepID=B8XGM3_9NEOP)

HSP 1 Score: 130 bits (327), Expect = 2.220e-37
Identity = 61/79 (77.22%), Postives = 67/79 (84.81%), Query Frame = 0
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 79
            P   +DD GPESRGFVENSYL GL+P EFFFHAMGGREGLIDTAVKTAETGYIQRRL+KA+ESV   YDGT+RN   Q+
Sbjct:   18 PHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQL 96          
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A7J7MNS3_9MAGN (DNA-directed RNA polymerase n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MNS3_9MAGN)

HSP 1 Score: 132 bits (333), Expect = 4.230e-37
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 0
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 79
            P   +DD GPESRGFVENSYLRGL+PQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E +  KYDGT+RN    V
Sbjct:   90 PHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 168          
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A7S0FQY3_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FQY3_9STRA)

HSP 1 Score: 139 bits (349), Expect = 5.290e-37
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 79
            P   +DDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTA KTAETGYIQRRLVKA+E+V A+YDGTLR    QV
Sbjct:  452 PHFSKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGQV 530          
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A0A7G366_ELAUM (DNA-directed RNA polymerase (Fragment) n=1 Tax=Elaeagnus umbellata TaxID=43233 RepID=A0A0A7G366_ELAUM)

HSP 1 Score: 133 bits (335), Expect = 6.010e-37
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 0
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 79
            P   +DD GPESRGFVENSYLRGL+PQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E +  KYDGT+RN    V
Sbjct:   63 PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 141          
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: A0A7S2K6M5_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6M5_9STRA)

HSP 1 Score: 140 bits (353), Expect = 6.050e-37
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 79
            P   +DDLGPESRGFVENSYLRGLSPQEF+FHAMGGREGLIDTA KTAETGYIQRRLVKA+E+V AKYDGTLR  N QV
Sbjct:  797 PHFHKDDLGPESRGFVENSYLRGLSPQEFYFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMAKYDGTLRTSNGQV 875          
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Match: UPI000FCD4A8B (DNA-directed RNA polymerase II subunit RPB1-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI000FCD4A8B)

HSP 1 Score: 132 bits (332), Expect = 7.200e-37
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 0
Query:    1 PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALESVSAKYDGTLRNQNNQV 79
            P   +DD GPESRGFVENSYL GL+P EFFFHAMGGREGLIDTAVKTAETGYIQRRL+K++ESV  KYD T+RN  NQV
Sbjct:  123 PHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQV 201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52377.12543.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHC4_9STRA1.170e-4193.67DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
D8LRY3_ECTSI1.170e-4193.67DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A6H5L9Y2_9PHAE9.000e-4090.24DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S2W8X2_9STRA7.850e-3982.28DNA-directed RNA polymerase (Fragment) n=1 Tax=Euc... [more]
B8XGM3_9NEOP2.220e-3777.22DNA-directed RNA polymerase (Fragment) n=2 Tax=Pth... [more]
A0A7J7MNS3_9MAGN4.230e-3778.48DNA-directed RNA polymerase n=1 Tax=Kingdonia unif... [more]
A0A7S0FQY3_9STRA5.290e-3783.54DNA-directed RNA polymerase (Fragment) n=1 Tax=Min... [more]
A0A0A7G366_ELAUM6.010e-3778.48DNA-directed RNA polymerase (Fragment) n=1 Tax=Ela... [more]
A0A7S2K6M5_9STRA6.050e-3784.81DNA-directed RNA polymerase subunit (Fragment) n=1... [more]
UPI000FCD4A8B7.200e-3778.48DNA-directed RNA polymerase II subunit RPB1-like n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038120RNA polymerase Rpb1, funnel domain superfamilyGENE3D1.10.132.30coord: 10..47
e-value: 2.7E-5
score: 26.1
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 23..79
e-value: 4.0E-27
score: 95.3
NoneNo IPR availablePANTHERPTHR19376:SF52DNA-DIRECTED RNA POLYMERASE II SUBUNIT 1coord: 2..75
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 2..75
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52377contigH-elongata_contig52377:2731..3841 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52377.12543.1mRNA_H-elongata_contig52377.12543.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52377 2731..3841 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52377.12543.1 ID=prot_H-elongata_contig52377.12543.1|Name=mRNA_H-elongata_contig52377.12543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
PPLCQDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAET
GYIQRRLVKALESVSAKYDGTLRNQNNQVW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038120Rpb1_funnel_sf
IPR007081RNA_pol_Rpb1_5