prot_H-elongata_contig52318.12537.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig52318.12537.1
Unique Name	prot_H-elongata_contig52318.12537.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	229

Homology

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BLAST of mRNA_H-elongata_contig52318.12537.1 vs. uniprot
Match: D7FPW5_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPW5_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 1.630e-76
Identity = 139/230 (60.43%), Postives = 156/230 (67.83%), Query Frame = 0

Query:    1 MYEFCAPSLPAILKVPRDAADKLIFEEEAKVKAEKEIKLAKDKADKGKK--GKVFAHLSGAAVRKPSLPVPPPAKQGESETVVGGGSAVEESKDMDIDSTVLKSEEASTKSKAGEGKGGAMEGVNGDDANDELKVALAMSMEVEDAGVEGASGPGLPGDFKGNYELFAVVTHKGREADGGHYMGWVRQDGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFKD 228
            M+EFC+PSL +ILKVPRDAADKLIFE+EAK KA KE               GKVFAHLSG                   ++   G   V+ESKDM++DS                   G  E     + +D+LK ALAMSM+ EDAGVEGA+GPGLP DFKG YELFAVVTHKGREADGGHYMGWVRQ+GDDWLVFDD+DVSPCKTEDIMNLKGGGDWHMAYLTFYRFK+
Sbjct:  417 MFEFCSPSLQSILKVPRDAADKLIFEQEAKEKAAKEAXXXXXXXXXXXXXXGKVFAHLSGXXXXXXXXXXXXXXXXXAEKSAASG---VQESKDMEVDSXXXXXXXXXXXXXXXXPAEGEDE-----ELSDDLKAALAMSMQAEDAGVEGAAGPGLPADFKGTYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 638

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BLAST of mRNA_H-elongata_contig52318.12537.1 vs. uniprot
Match: A0A7S3XWY9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWY9_HETAK)

HSP 1 Score: 159 bits (401), Expect = 6.110e-46
Identity = 74/112 (66.07%), Postives = 88/112 (78.57%), Query Frame = 0

Query:  124 GDDANDELKVALAMSMEVEDA-GVEGASGPGLPGDFKGNYELFAVVTHKGREADGGHYMGWVRQDG------DDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFKD 228
            G++  + L+ ALA+SM+   A   EGA+GPGLPGDF+GNYELF VVTHKGREADGGHYMGWV+Q+G      D W VFDDADVS    E++M LKGGGDWHMAYLTFYR+K+
Sbjct:   42 GEEEREALEAALALSMQPGAAVAAEGAAGPGLPGDFRGNYELFGVVTHKGREADGGHYMGWVKQEGGRGDPSDKWFVFDDADVSETTEEEVMKLKGGGDWHMAYLTFYRYKN 153

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BLAST of mRNA_H-elongata_contig52318.12537.1 vs. uniprot
Match: A0A7S2DH50_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH50_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.680e-43
Identity = 73/109 (66.97%), Postives = 88/109 (80.73%), Query Frame = 0

Query:  125 DDANDELKVALAMSMEVEDAGVEGAS-----GPGLPGDFKGNYELFAVVTHKGREADGGHYMGWVRQDGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFKD 228
            +D +++LK ALA+S  +  A  +  S     G GL  DF+GNYELFA+VTHKGR ADGGHY+GWVRQ+GDDWLVFDDADVSPCKTED++ LKGGGD+HMAYLTFYR K+
Sbjct:  171 EDEDEDLKAALALSTAMNTADSQPVSNKDRVGYGLDPDFQGNYELFALVTHKGRLADGGHYIGWVRQEGDDWLVFDDADVSPCKTEDVLPLKGGGDYHMAYLTFYRSKN 279

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BLAST of mRNA_H-elongata_contig52318.12537.1 vs. uniprot
Match: A0A7S2DHH2_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHH2_9STRA)

HSP 1 Score: 156 bits (394), Expect = 3.970e-41
Identity = 73/109 (66.97%), Postives = 88/109 (80.73%), Query Frame = 0

Query:  125 DDANDELKVALAMSMEVEDAGVEGAS-----GPGLPGDFKGNYELFAVVTHKGREADGGHYMGWVRQDGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFKD 228
            +D +++LK ALA+S  +  A  +  S     G GL  DF+GNYELFA+VTHKGR ADGGHY+GWVRQ+GDDWLVFDDADVSPCKTED++ LKGGGD+HMAYLTFYR K+
Sbjct:  417 EDEDEDLKAALALSTAMNTADSQPVSNKDRVGYGLDPDFQGNYELFALVTHKGRLADGGHYIGWVRQEGDDWLVFDDADVSPCKTEDVLPLKGGGDYHMAYLTFYRSKN 525

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BLAST of mRNA_H-elongata_contig52318.12537.1 vs. uniprot
Match: W7TNR7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNR7_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.130e-40
Identity = 78/117 (66.67%), Postives = 84/117 (71.79%), Query Frame = 0

Query:  113 EGKGGAMEGVNGDDANDELKVALAMSM-EVEDAGVEGAS-GPGLPGDFKGNYELFAVVTHKGREADGGHYMGWVRQDGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 227
            E KG    G    +    L+ ALAMSM +  DA V  A  GPGLP DFKG YELF VVTHKGR ADGGHYMGWVRQ GDDWLVFDD DVS CKT +++ L GGGDWHMAYL FYRFK
Sbjct:  396 EAKGEESSGNGSSEEEAALQAALAMSMADSADAAVPPAPCGPGLPMDFKGLYELFGVVTHKGRTADGGHYMGWVRQKGDDWLVFDDEDVSECKTAEVLQLSGGGDWHMAYLCFYRFK 512

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BLAST of mRNA_H-elongata_contig52318.12537.1 vs. uniprot
Match: A0A7S0AW48_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AW48_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.900e-40
Identity = 74/125 (59.20%), Postives = 85/125 (68.00%), Query Frame = 0

Query:  122 VNGDDANDE--LKVALAMSMEVEDAGVEGASGPGLPGDFKGNYELFAVVTHKGREADGGHYMGWVRQD-----------------GDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 227
            V GDDA ++  LK ALAMS+E E   V    GPGLP +F+G YELFAVVTHKGR+ADGGHYM WVR +                  DDW VFDD +VSPCKTED++ LKGGGDWHM+YL FYR K
Sbjct:   39 VAGDDAEEDEALKAALAMSVEEELTPV----GPGLPDNFQGQYELFAVVTHKGRDADGGHYMAWVRGEKPEGAPEAEKIGDSEDTNDDWYVFDDDEVSPCKTEDVLKLKGGGDWHMSYLNFYRCK 159

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BLAST of mRNA_H-elongata_contig52318.12537.1 vs. uniprot
Match: A0A7S1TQP1_9STRA (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQP1_9STRA)

HSP 1 Score: 152 bits (383), Expect = 9.450e-40
Identity = 71/100 (71.00%), Postives = 77/100 (77.00%), Query Frame = 0

Query:  128 NDELKVALAMSMEVEDAGVEGASGPGLPGDFKGNYELFAVVTHKGREADGGHYMGWVRQDGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 227
            +DELK A+AMSM   DAG      PGLP DFKGNYELF VVTHKGREAD GHY+GWVRQ+GD WLVFDD  V    TE I+NLKGGGDWHMAYL FYR +
Sbjct:  392 DDELKAAMAMSMPPVDAG------PGLPDDFKGNYELFGVVTHKGREADAGHYIGWVRQEGDQWLVFDDDHVEEVNTEAILNLKGGGDWHMAYLAFYRAR 485

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BLAST of mRNA_H-elongata_contig52318.12537.1 vs. uniprot
Match: K0TKS4_THAOC (USP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TKS4_THAOC)

HSP 1 Score: 144 bits (362), Expect = 1.410e-39
Identity = 79/142 (55.63%), Postives = 91/142 (64.08%), Query Frame = 0

Query:  108 KSKAGEGKGGAMEGVNGDDANDELKVALAMSMEVEDAGVEGASGPGLPGDFKGNYELFAVVTHKGREADGGHYMGWVRQDG----------------------DDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 227
            K K G+G    M+G + +D  D L+ ALAMS+E E   V    GPGLP DF+G YELFAVVTHKGR+ADGGHYMGWV+ D                       DDW VFDD +VSPCKTEDI+ LKGGGDWHM+YL FYR K
Sbjct:   54 KKKDGDGDA-EMDGADDEDDAD-LRAALAMSVEPELPPV----GPGLPPDFRGLYELFAVVTHKGRDADGGHYMGWVKADNSGRQAAGDDKKREKIGDTEEENDDWYVFDDDEVSPCKTEDILKLKGGGDWHMSYLNFYRAK 189

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BLAST of mRNA_H-elongata_contig52318.12537.1 vs. uniprot
Match: B7G630_PHATC (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G630_PHATC)

HSP 1 Score: 151 bits (382), Expect = 1.460e-39
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 0

Query:  126 DANDELKVALAMSMEVEDAGVEGASGPGLPGDFKGNYELFAVVTHKGREADGGHYMGWVRQDG---DDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 227
            +A+++L+ ALAMS+E  D   +   GPGLP +F+G YELFAV+THKGR+ADGGHYM WV+ D    +DW VFDD +VSPCKTED++ LKGGGDWHM+YL FYR K
Sbjct:  394 EADEDLQAALAMSLETTDGTAKTPIGPGLPENFQGQYELFAVITHKGRDADGGHYMAWVKADNPTNEDWFVFDDDEVSPCKTEDVLKLKGGGDWHMSYLNFYRAK 498

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BLAST of mRNA_H-elongata_contig52318.12537.1 vs. uniprot
Match: B8BX32_THAPS (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BX32_THAPS)

HSP 1 Score: 152 bits (383), Expect = 1.570e-39
Identity = 72/104 (69.23%), Postives = 81/104 (77.88%), Query Frame = 0

Query:  129 DELKVALAMSMEVEDAGVEGASGPGLPGDFKGNYELFAVVTHKGREADGGHYMGWVRQDG-----DDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 227
            +EL+ ALAMS+E E   V    GPGLP DF+G YELFAVVTHKGR+ADGGHYMGWV+ D      DDW VFDD +VSPCKTEDI+ LKGGGDWHM+YL FYR K
Sbjct:  428 EELQAALAMSVETEQPPV----GPGLPHDFQGLYELFAVVTHKGRDADGGHYMGWVKADNSDPHNDDWFVFDDDEVSPCKTEDILKLKGGGDWHMSYLNFYRAK 527

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig52318.12537.1 vs. uniprot

BLAST of mRNA_H-elongata_contig52318.12537.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPW5_ECTSI	1.630e-76	60.43	Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto...	[more]
A0A7S3XWY9_HETAK	6.110e-46	66.07	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2DH50_9STRA	2.680e-43	66.97	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2DHH2_9STRA	3.970e-41	66.97	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dict...	[more]
W7TNR7_9STRA	1.130e-40	66.67	Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Mono...	[more]
A0A7S0AW48_9STRA	2.900e-40	59.20	Hypothetical protein n=1 Tax=Minutocellus polymorp...	[more]
A0A7S1TQP1_9STRA	9.450e-40	71.00	Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Phae...	[more]
K0TKS4_THAOC	1.410e-39	55.63	USP domain-containing protein n=1 Tax=Thalassiosir...	[more]
B7G630_PHATC	1.460e-39	62.86	Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Phae...	[more]
B8BX32_THAPS	1.570e-39	69.23	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Thal...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 23..43
None	No IPR available	GENE3D	3.90.70.10		coord: 1..228 e-value: 4.8E-24 score: 86.9
None	No IPR available	PANTHER	PTHR43982	FAMILY NOT NAMED	coord: 1..227
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PFAM	PF00443	UCH	coord: 87..224 e-value: 5.4E-13 score: 49.0
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00973	USP_2	coord: 162..180
IPR028889	Ubiquitin specific protease domain	PROSITE	PS50235	USP_3	coord: 1..227 score: 13.366
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 154..225

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig52318	contig	H-elongata_contig52318:1786..3992 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig52318.12537.1	mRNA_H-elongata_contig52318.12537.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig52318 1786..4010 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig52318.12537.1 ID=prot_H-elongata_contig52318.12537.1|Name=mRNA_H-elongata_contig52318.12537.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
MYEFCAPSLPAILKVPRDAADKLIFEEEAKVKAEKEIKLAKDKADKGKKG
KVFAHLSGAAVRKPSLPVPPPAKQGESETVVGGGSAVEESKDMDIDSTVL
KSEEASTKSKAGEGKGGAMEGVNGDDANDELKVALAMSMEVEDAGVEGAS
GPGLPGDFKGNYELFAVVTHKGREADGGHYMGWVRQDGDDWLVFDDADVS
PCKTEDIMNLKGGGDWHMAYLTFYRFKD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001394	Peptidase_C19_UCH
IPR018200	USP_CS
IPR028889	USP_dom
IPR038765	Papain-like_cys_pep_sf