prot_H-elongata_contig52226.12525.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52226.12525.1
Unique Nameprot_H-elongata_contig52226.12525.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length136
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52226.12525.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 65..93
e-value: 36.0
score: 10.3
coord: 39..64
e-value: 8.9E-4
score: 28.6
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 42..62
e-value: 0.026
score: 14.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 19..136
e-value: 2.4E-16
score: 61.6
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 22..133
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 22..133
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 40..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52226contigH-elongata_contig52226:1206..2178 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52226.12525.1mRNA_H-elongata_contig52226.12525.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52226 465..2178 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52226.12525.1 ID=prot_H-elongata_contig52226.12525.1|Name=mRNA_H-elongata_contig52226.12525.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MEPMKSNAPPPADRSQWTCQTGVNDLRDDALAHLLVNVGEGLEYLRLRDC
PHITDEGIRAVASTCPRLRELDIGTQSYSVNITQQSLVHLSLARCASSLV
YLGLRNLHRIGLHVGLSSIGTQFPGLRRLDLAELDC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf