prot_H-elongata_contig52177.12510.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52177.12510.1
Unique Nameprot_H-elongata_contig52177.12510.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length68
Homology
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BLAST of mRNA_H-elongata_contig52177.12510.1 vs. uniprot
Match: D7FX65_ECTSI (XPA_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX65_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.500e-18
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0 
Query:    1 MKLYLRRHVTEYSYKRWGGESGLDAERRRREALKYDRTLARTKGVFKRGK 50
            MKLYLRR V  YSYKRWG E GL AERRRRE+LKYDR+LARTKG+FKR +
Sbjct:   62 MKLYLRREVVAYSYKRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSR 111
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BLAST of mRNA_H-elongata_contig52177.12510.1 vs. uniprot
Match: A0A6H5KUI3_9PHAE (XPA_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.300e-17
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 
Query:    1 MKLYLRRHVTEYSYKRWGGESGLDAERRRREALKYDRTLARTKGVFKRGKS 51
            MKLYLRR V  YSY+RWG E GL AERRRRE+LKYDR+LARTKG+FKR +S
Sbjct:  245 MKLYLRREVVAYSYRRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSRS 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52177.12510.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX65_ECTSI1.500e-1878.00XPA_C domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KUI3_9PHAE3.300e-1776.47XPA_C domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037129XPA domain superfamilyGENE3D3.90.530.10coord: 1..31
e-value: 5.9E-6
score: 28.0
IPR009061Putative DNA-binding domain superfamilySUPERFAMILY46955Putative DNA-binding domaincoord: 1..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52177contigH-elongata_contig52177:961..2274 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52177.12510.1mRNA_H-elongata_contig52177.12510.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52177 355..3486 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52177.12510.1 ID=prot_H-elongata_contig52177.12510.1|Name=mRNA_H-elongata_contig52177.12510.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MKLYLRRHVTEYSYKRWGGESGLDAERRRREALKYDRTLARTKGVFKRGK
SNHGAAFSSAAYYDDDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037129XPA_sf
IPR009061DNA-bd_dom_put_sf